Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01199 ATGAGAACCATGTCAAAAGTTATATGCTTCACTTTGATAGTTTTTTTAGTGGCACTACATGTTGAGTGCCGTTCTCTTCGCCATAGTGTTTCTGATGGGCTTGATGCTGTTCAACCCCATGAGTCTTATGTGCAACTTATAGATGAAAAGGTTGAATCTTCTTCTGATGGTTCTTACTGTAAGCAAATGTACGGGTTCTTGCCTTGTTCCAATAACATACTTGGCCATCTTTTCCTCATTTTGGTTTATGAGTACTTGTTGTTCCATGGAGAGTCATACTTGGCTCTTGGGGGCGAGCAAATCTTCAAGATTCTTGGCCCTGGTGTTTTTGGCGCTAGTGCCTTTGATATTCTGGGTGCTCTTCCTGAGTCCTTAATTCTTGTTGTTACTGGACTTTCAAGTGACAAGGAGAGTGCGCAAGAATATGCTTCCACTGGTGTGGGTTTGTTGGCTGGATCGTCCATCTTACTTCTAACAGTAGTGTGGGGAACATGTGTTATCATTGGCAATCAGAAGTTGATAAATGACTCTAACTCTGGAGGCTTCCATTCATCAAGTGGAGGAATAAAAAAATCACTAACTGCTCATTCCCTTCATTTACAGTCTTCTTTTGATGAATTTATAGGTTATGGTATCACTATGGATGCAGATACTAGAGAGATGGCAATAATCATGGTTTGCTCAGTTATACCACTCATCATAATGCAGATTCCCCATTTGTTCCACTTCTCTTCTACATCACGCAATGTGACCCTGATGGTTGCTCTTACAGTAGCTGTTACTTTTCTTATCTCATACTTCATTTACCAGGTCTTTAAACCTCAAATAGAAAAAACTAGACTGGAGTATATTAAGCATGATGACTTAATATTAAGAATTTTTCAACGTGTTGAGAAACAAACTCTGCAAAAGATCCTGGCCGAGGATGGAACTCCCAATGTGGCTGCAATAAGTGGGTTGTATCATGAAATTAGTCAGCACGGGAGCAAGGACTTGTTGGCCTCCGAAGTGAAAGAGCTATTGTTTGGGAACAAATTAACTGACACAGATATCAAAGAGGAACAGATAGCAGACTTGTTAAAAGTTTTTGACCGAAATGGTGACCAAATTATAACCAAGGAAGAGTTTGTCACTGGTTTAACAGAATACATTAACCAAACAAAGCATGCCTTGGATAGACAATACCTTCCAAAAGAATCTCTGAACAAAATGTATCAGACTTTTATCAAGCCATGGATTGAACACGTGAGAAAGGAACGTGAATTGAAGGGACATCTTATATCCGAAGTCCTAAAGCATGCTCAGAATGATATGGTTGGCAAGCTGCGAAAAGATGATGGCACACCTGACAAAACTGCAATCAGAAGGTTGTTTGAGGAAATTGATGTTAATGGGGATAGCCACATTTCAAGGTCTGAATTAAAAAAAATAGTCAAGGGCATCCAGTTTAGCAAGGTTGTAGATGCTGAGGAGGCAGTTACAAAACTTGCTCAAGATCTTGATATCAATCAAGACGATGAAATTAGTGAGACCGAGTTTACAGAAGGTTTTACAAAATGGATAACCTCAAATTCCAGCCAAGCTGCTAACTCAAAACCTTCATCTCAGGCAATTCATCAAACCTGGGAAGATGTTGAAAAGGTAATGGAAGAGAATCAGACCAAAGGGGCTTCTGCATGGTTGACCGCTATAGGATATGTGGTCTTGGGAGTTACTATCCTGTCTCTTCTTGCAGAGCCCTTAATAGCAAGTGTTCAAAAATTCTCTGAAAAAGCACGAATTTCATCATTTTTTATCTCATTCATTTTAGTCCCCCTGGCAACAAATTTTAGAGAAGCAACATCAGCAATCAAAGAAGCTAGCCATAAGAAGAGCAGTAACACTTCTCAGACAATGTATGAGATTTATGGAGCAGTGTTCATGAACAACATTCTTGGCTTTGTGGTGATCTCTATTCTCATATACATGCGTGAGATCACTTGGCAATTCTCAGCTGATGTACTGGTTGTGGCAATAGTTTGTGCAGTAATGGGCCTCACTGCTAGATTTCGTCCCATTTTTCCTCTTTGGACATCCTTCCCTGCATACCTCATGTACCTAATAGCATTGCTTATGGTCTTTGTCCTCAAAGATGTTCTCAATTATGTTTAG 2151 0.398 MRTMSKVICFTLIVFLVALHVECRSLRHSVSDGLDAVQPHESYVQLIDEKVESSSDGSYCKQMYGFLPCSNNILGHLFLILVYEYLLFHGESYLALGGEQIFKILGPGVFGASAFDILGALPESLILVVTGLSSDKESAQEYASTGVGLLAGSSILLLTVVWGTCVIIGNQKLINDSNSGGFHSSSGGIKKSLTAHSLHLQSSFDEFIGYGITMDADTREMAIIMVCSVIPLIIMQIPHLFHFSSTSRNVTLMVALTVAVTFLISYFIYQVFKPQIEKTRLEYIKHDDLILRIFQRVEKQTLQKILAEDGTPNVAAISGLYHEISQHGSKDLLASEVKELLFGNKLTDTDIKEEQIADLLKVFDRNGDQIITKEEFVTGLTEYINQTKHALDRQYLPKESLNKMYQTFIKPWIEHVRKERELKGHLISEVLKHAQNDMVGKLRKDDGTPDKTAIRRLFEEIDVNGDSHISRSELKKIVKGIQFSKVVDAEEAVTKLAQDLDINQDDEISETEFTEGFTKWITSNSSQAANSKPSSQAIHQTWEDVEKVMEENQTKGASAWLTAIGYVVLGVTILSLLAEPLIASVQKFSEKARISSFFISFILVPLATNFREATSAIKEASHKKSSNTSQTMYEIYGAVFMNNILGFVVISILIYMREITWQFSADVLVVAIVCAVMGLTARFRPIFPLWTSFPAYLMYLIALLMVFVLKDVLNYV 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01199 716 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 62 709 IPR004713 GO:0006812|GO:0008324|GO:0016020
Spst5g01199 716 ProSitePatterns EF-hand calcium-binding domain. 364 376 IPR018247 -
Spst5g01199 716 SMART efh_1 355 383 IPR002048 GO:0005509
Spst5g01199 716 SMART efh_1 453 481 IPR002048 GO:0005509
Spst5g01199 716 SMART efh_1 492 520 IPR002048 GO:0005509
Spst5g01199 716 ProSiteProfiles EF-hand calcium-binding domain profile. 449 484 IPR002048 GO:0005509
Spst5g01199 716 ProSitePatterns EF-hand calcium-binding domain. 501 513 IPR018247 -
Spst5g01199 716 ProSiteProfiles EF-hand calcium-binding domain profile. 351 386 IPR002048 GO:0005509
Spst5g01199 716 Pfam Sodium/calcium exchanger protein 564 707 IPR004837 GO:0016020|GO:0055085
Spst5g01199 716 Pfam EF-hand domain pair 452 516 IPR002048 GO:0005509
Spst5g01199 716 SUPERFAMILY EF-hand 339 524 IPR011992 -
Spst5g01199 716 Gene3D - 311 391 - -
Spst5g01199 716 CDD EFh 454 518 IPR002048 GO:0005509
Spst5g01199 716 FunFam Sodium/calcium exchanger NCL 392 532 - -
Spst5g01199 716 Gene3D - 392 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01199 Spst-Chr5 18539650 18543998 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01199 404 709 EF-hand Containing Proteins AT1G53210 39.577 9.98e-61 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01199 - - gmx:100799062 1169.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g01199 5 18539650 18543998 Spst5g01199 5 18539650 18543998 ECH