Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01009 ATGTCTCTTGCACCTTCCACTGCTCTTCTTTCTACCCAACATGCACTACCTAACATCAATCGACCTACTGTAAATTTTCCTCCAAGCATTTGGCGGGATGTTTTCCTTCAGTATGATTCAGAATCAATGGAAGTTAGCGACTATGTGAAACAGCAAGCACAAATGCTGAAAGAAAAGGTGAAAACAATGTTTCAGTCATCAACTAATCAAAATATCATAGAAAAACTAAATTTTATTGACTCAGTCCAACGTTTGGGTGCATCCTATCATTTCCAACAAGAAATTAATCGAGTATTGGAACAAATCTACAATACTTATATGAAAAATAACATCAATGAAGATGATAATCATTACTCTGCTGCTCTACTCTTTCGTTTACTGAGACAACAAGGATATCCAATTTCATCAAATGTATTTGACAAATTCAAGGATGACCGAGGAAACTTCAATGAAACACTTGCCAACGATGTTCAAGGGTTGTGCAGTTTGTATGAAGCAACACAGCTAAGAACTCACGGAGATGATATACTCGAAGAAGCATGCAACTTCTCAAATTCTCAACTTAAGTCCTTCGCCAACCAACTAAGTTCTTCTCAAGCTGCACAAATCAATCACTGTTTAAGGAAACCTCTTGATAAGATTGTACCTAGGTTTGATGCGAGGTATCACATGACTCTTTATGGACAAGATCCTTCTCATGACAAGACACTTCTGTCATTTGCAAAAGTGGATTTCAATATTCTTCAAAAATTGCATCAAAAGGAAATTATCACAATCAACAAGTGGTGGAAAAACTCAAACTTTGAGATAAAGGTCCCTTACGCTAGAGATAGGTTGGTTGAGTCCTTCCTTTGGTCATTGGCCATATCCTACAAACCTGAATACAGCCATGGAAGAATGTTTGTGGGAAAGTTGATAGGCGTTGTATGTCTTCTAGACGATACTTACGATGCTTATGGCACTGTTGAAGAACTTGAACTTTTCACTGAAGCAATTAAAAGATGGAATATTAGTCCCATTGAATCTCTTCCACAGTGCATGAAGGAAGTATTTCATTCAGTTCTAGAATTGTCTGATGAAATAGAGTTGGCGACAACGGCCAGTGGAAAATCAAGCTTTGTGGTGCCACATTTTAGAAAAGCTGTTTTTAATTTAATAAATGGCTACATGGTTGAAGCAAAATGGTGCCATGAGGGCTACATTCCAACATATGATGAATACAAAGTTAACGGAATTTTCACTTCTTGTTTCCCTCTTTTCATCACAGCGTTTATTGGCTTTGGAGAATTTGCAACAGAAGAAACGTTCGATTGGATTTCTAGTGATCCAAATATCATTCAAGCTGCATCAATTATTGGCAGAGTGTTGGATGACATGGCTTCACATAAGTTTGAACAGCAAAGAGTACATGTTGCCTCAGCAGTTGAATGTTGCATGAAGCAACACGGCATTTCAGAAGCAGAGGCCTATTACTTTATTCACAATGATGTGAAAGACTGCTGGAAGGTTATAAATGAAGAGTTTATCCAGTCAAACGATATCTCAAAATCTGTGCTTGAATTCGCAGTTAATTTGGCACGTATGTCTGAGGTTTCATATGAAAATCATCAGGATAAATATACACATGGAGAATTACTGAAAGATTGCATCTCTTCGTTGCTTCTGGATCCAATTTCCTTTGATCTAGATGAGTAA 1695 0.3735 MSLAPSTALLSTQHALPNINRPTVNFPPSIWRDVFLQYDSESMEVSDYVKQQAQMLKEKVKTMFQSSTNQNIIEKLNFIDSVQRLGASYHFQQEINRVLEQIYNTYMKNNINEDDNHYSAALLFRLLRQQGYPISSNVFDKFKDDRGNFNETLANDVQGLCSLYEATQLRTHGDDILEEACNFSNSQLKSFANQLSSSQAAQINHCLRKPLDKIVPRFDARYHMTLYGQDPSHDKTLLSFAKVDFNILQKLHQKEIITINKWWKNSNFEIKVPYARDRLVESFLWSLAISYKPEYSHGRMFVGKLIGVVCLLDDTYDAYGTVEELELFTEAIKRWNISPIESLPQCMKEVFHSVLELSDEIELATTASGKSSFVVPHFRKAVFNLINGYMVEAKWCHEGYIPTYDEYKVNGIFTSCFPLFITAFIGFGEFATEETFDWISSDPNIIQAASIIGRVLDDMASHKFEQQRVHVASAVECCMKQHGISEAEAYYFIHNDVKDCWKVINEEFIQSNDISKSVLEFAVNLARMSEVSYENHQDKYTHGELLKDCISSLLLDPISFDLDE 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01009 564 CDD Terpene_cyclase_plant_C1 21 557 IPR044814 GO:0010333|GO:0016102
Spst5g01009 564 Gene3D - 70 233 IPR036965 GO:0010333|GO:0016829
Spst5g01009 564 FunFam Isoprene synthase, chloroplastic 70 233 - -
Spst5g01009 564 PANTHER OS04G0344100 PROTEIN-RELATED 19 547 - -
Spst5g01009 564 SFLD Terpene Cyclase Like 1 C Terminal Domain 234 559 IPR034741 -
Spst5g01009 564 SUPERFAMILY Terpenoid synthases 233 559 IPR008949 -
Spst5g01009 564 FunFam Isoprene synthase, chloroplastic 223 548 - -
Spst5g01009 564 Pfam Terpene synthase family, metal binding domain 238 502 IPR005630 GO:0000287|GO:0010333|GO:0016829
Spst5g01009 564 Pfam Terpene synthase, N-terminal domain 30 207 IPR001906 GO:0010333|GO:0016829
Spst5g01009 564 SFLD Isoprenoid Synthase Type I 234 559 - -
Spst5g01009 564 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 27 233 IPR008930 -
Spst5g01009 564 Gene3D Farnesyl Diphosphate Synthase 28 544 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01009 Spst-Chr5 9824349 9827026 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01009 K15803 - gmx:100781367 839.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g01009 5 9824349 9827026 Spst5g01009 5 9824349 9827026 ECH
Spst5g01009 5 9824349 9827026 Spst11g00757 11 31085875 31086247 PCT