Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01003 ATGGCAGCCATGGCTGCTCTTCAGAGCTCAATGACCGGTCTCTCCCTCTCCTCCAACTCTTTCTTAGGCCAGCGCTTTTCTCCCATCACTCTCCCCTCTCTTCTTCCGGGTAAGTCAACAGAGAAGCAATGTCCCATTGTAATGAGGCTTAAACGATGGGAACGAAAGAAGTGTAAACCAAACAGCCTTCCTATCTTGCACAAAATGCATGTTAGACTTGGAGATACGGTGCAAATCATAACTGGAAGTGAAAGGGGTAAAGTTGGGGAGATTACTAGAATCTTCAAGCATAACAGCACTGTAATAGTGAAAGATTTAAATTTGAAGACAAAGCATGTGAAGAGTAAAGAAGAGGGGGAACCGGGGCAAATTATTAAGATTGAAGGTCCTATCCACAGCTCAAATGTGATGCTGTACTCCAAAGATCAGAATGTAGCAAGCCGAGTGGGGCATAAAGTCCTTGATAATGGTAAAAAGGTCAGGTACCTTATAAAAACTGGAGAAATAATTGATAGTGCAGAGAATTGGAAGAAACTGAAGGAGGAGGCTAGTAAGAAACCTGAAGAAGCTGCTGCTGCTGCCTAG 585 0.4359 MAAMAALQSSMTGLSLSSNSFLGQRFSPITLPSLLPGKSTEKQCPIVMRLKRWERKKCKPNSLPILHKMHVRLGDTVQIITGSERGKVGEITRIFKHNSTVIVKDLNLKTKHVKSKEEGEPGQIIKIEGPIHSSNVMLYSKDQNVASRVGHKVLDNGKKVRYLIKTGEIIDSAENWKKLKEEASKKPEEAAAAA 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01003 194 CDD KOW_RPL26 74 138 IPR041988 GO:0003723
Spst5g01003 194 NCBIfam 50S ribosomal protein L24 68 170 IPR003256 GO:0003735|GO:0005840|GO:0006412
Spst5g01003 194 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN L24 2 189 IPR003256 GO:0003735|GO:0005840|GO:0006412
Spst5g01003 194 SUPERFAMILY Translation proteins SH3-like domain 67 169 IPR008991 -
Spst5g01003 194 Hamap 50S ribosomal protein L24 [rplX]. 69 165 IPR003256 GO:0003735|GO:0005840|GO:0006412
Spst5g01003 194 Pfam Ribosomal proteins 50S L24/mitochondrial 39S L24 106 170 IPR003256 GO:0003735|GO:0005840|GO:0006412
Spst5g01003 194 ProSitePatterns Ribosomal protein L24 signature. 74 91 IPR005825 GO:0003735|GO:0005840|GO:0006412
Spst5g01003 194 Gene3D - 64 169 IPR014722 -
Spst5g01003 194 Pfam KOW motif 74 104 IPR005824 -
Spst5g01003 194 SMART kow_9 70 97 IPR005824 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01003 K02895 - gmx:100306643 332.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g01003 5 9734617 9737502 Spst5g01003 5 9734617 9737502 ECH