Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00999 ATGATCAGAACCGTCCATAATCAAAGCAATCCAACGGCAATCGTTATCGATCCGCGTCCTTCACTGTCATTGGTCCAGTTTCCACATATTGTATTATATAAACCTCTCAACCGCTCAAAGTGTAGAAATACAATTTCTTCTCTCTCAGTCATCGGAGCTTATTGTTGTTCACCCTTCCTGTTCCCAAATCTTCTCTCGCTATTAGGTTACGGTTCATCAATGGCAGGTCGAGGAAAAACCCTAGGATCTAGCGCCGCCAAGAAGGCCACCTCCCGGAGCAGCAAAGCCGGTCTGCAATTCCCCGTCGGCCGTATTGCTCGTTTCCTCAAAGCCGGAAAGTACGCCGAGCGTGTCGGTGCGGGTGCTCCTGTCTATCTGGCCGCTGTCCTTGAATATCTCGCCGCTGAGGTTCTCGAGTTGGCTGGAAATGCTGCGAGAGACAACAAGAAGACTCGAATTGTGCCTCGTCACATTCAATTGGCGGTGAGGAATGACGAAGAGTTGAGCAAGCTTCTTGGAGATGTCACCATAGCTAACGGTGGTGTTATGCCCAACATTCACAACCTTTTGCTTCCGAAGAAGGCTGGTGGCTCATCCAAGGGTGCTGGTGCCGACGACGACTCTTAA 627 0.5024 MIRTVHNQSNPTAIVIDPRPSLSLVQFPHIVLYKPLNRSKCRNTISSLSVIGAYCCSPFLFPNLLSLLGYGSSMAGRGKTLGSSAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGGSSKGAGADDDS 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00999 208 SMART h2a4 77 197 IPR002119 GO:0000786|GO:0003677|GO:0030527
Spst5g00999 208 CDD H2A 82 194 IPR002119 GO:0000786|GO:0003677|GO:0030527
Spst5g00999 208 Gene3D Histone, subunit A 74 201 IPR009072 GO:0046982
Spst5g00999 208 PRINTS Histone H2A signature 117 132 IPR002119 GO:0000786|GO:0003677|GO:0030527
Spst5g00999 208 PRINTS Histone H2A signature 132 145 IPR002119 GO:0000786|GO:0003677|GO:0030527
Spst5g00999 208 PRINTS Histone H2A signature 174 192 IPR002119 GO:0000786|GO:0003677|GO:0030527
Spst5g00999 208 PRINTS Histone H2A signature 88 110 IPR002119 GO:0000786|GO:0003677|GO:0030527
Spst5g00999 208 PRINTS Histone H2A signature 146 160 IPR002119 GO:0000786|GO:0003677|GO:0030527
Spst5g00999 208 Pfam C-terminus of histone H2A 166 200 IPR032454 -
Spst5g00999 208 ProSitePatterns Histone H2A signature. 96 102 IPR032458 -
Spst5g00999 208 FunFam Histone H2A 74 202 - -
Spst5g00999 208 SUPERFAMILY Histone-fold 83 196 IPR009072 GO:0046982
Spst5g00999 208 PANTHER HISTONE H2A 84 194 IPR002119 GO:0000786|GO:0003677|GO:0030527
Spst5g00999 208 Pfam Core histone H2A/H2B/H3/H4 83 163 IPR007125 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00999 Spst-Chr5 9678726 9679546 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00999 K11251 - qsa:O6P43_000865 213.386
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00999 5 9678726 9679546 Spst5g00999 5 9678726 9679546 ECH