LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst5g00986	ATGGTGGCAGGGGATAAAAGGGGGAAGTCATTTGGTTTGGGGTGTGAGCCTGTGGTGGGATCATTAGCTGCGGCCAAGAAGAGGGAATACCGAATCACCAATCGCCTCCAAGAGGGAAATCGCCCTATATACGCCGTCGTTTTCAACTTTCTTGACTCTCAATACCTCAACGTTTTCGCCACTGTTGGTGGCAACAGGATTACTGTTTATCAATGCCTTGAAGGAGGGATTATTGCTGTTCTGCAGTCTTATGTGGATGAGGATAAGGATGAGTCCTTTTACACTGTGGGTTGGGCATGCAGTGAAGCTGGGAGTCCATTTATTGTGGCTGGAGGAAGCAAGGGTATAGTCCGAGTCATTGATGCTGGCCGTGAGAAGATATACAGGAGTTTTATTGGCCATGGGGAGTCTATAAATGAAGTTCGGACTCAAGCATTAAAGCCATCACTTGTGATATCTGCAAGCAAAGATGAATCTCTCCGGTTGTGGAATGTTCAAACTGGAATATGTATCCTCATATTCGCGGGAGCTGGAGGACACCGCAATGAAATCTTAAGTGTTGACTTTCATCCATCGGATATATATCGAATAGCTAGTTGTGGGATGGATAATACTGTAAAAATATGGTCTATGAAGGATTTCTGGACATATGTTGAAAAATCATTCACATGGACAGATCTTCCTTCAAAGTTCCCAACAAAATTTGTCCAATATCCTGTATACAATGCTTCAGTTCATGTAAATTATGTGGACTGTACTAGGTGGCTGGGTGACTTTATCCTCTCAAAGAGTGTTGATGATGAAATTATCTTGTGGGAACCTAAAGTGAAGAAAGAAATTACAGGGGAGGGTGTAGTTGACGTCCTTCAGAAGTACCCTATTCCCGAGTGTGATATCTGGTTCATCAAGTTTTCTTGTGATTTCCATTTCAACATAGCTTCAGTAGGTAACAGGGAAGGCAAGATTTTTGTTTGGGAACTGCAGTCAACTCCTCCTGTACTTGCTACAAAGTTGTCACATCCTCAATCAAAATCTCCAATCAGGCAGACTGCTACTTCCTTTGATGGAAGTACTATATTGAGTTGCTGTGAGGATGGGACAATATGGCGCTGGGATGATGTTTCAAACTCTTCAACCTAA	1140	0.4289	MVAGDKRGKSFGLGCEPVVGSLAAAKKREYRITNRLQEGNRPIYAVVFNFLDSQYLNVFATVGGNRITVYQCLEGGIIAVLQSYVDEDKDESFYTVGWACSEAGSPFIVAGGSKGIVRVIDAGREKIYRSFIGHGESINEVRTQALKPSLVISASKDESLRLWNVQTGICILIFAGAGGHRNEILSVDFHPSDIYRIASCGMDNTVKIWSMKDFWTYVEKSFTWTDLPSKFPTKFVQYPVYNASVHVNYVDCTRWLGDFILSKSVDDEIILWEPKVKKEITGEGVVDVLQKYPIPECDIWFIKFSCDFHFNIASVGNREGKIFVWELQSTPPVLATKLSHPQSKSPIRQTATSFDGSTILSCCEDGTIWRWDDVSNSST	379

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst5g00986	379	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	131	168	-	-
	Spst5g00986	379	Pfam	WD domain, G-beta repeat	128	164	IPR001680	GO:0005515
	Spst5g00986	379	Pfam	WD domain, G-beta repeat	178	210	IPR001680	GO:0005515
	Spst5g00986	379	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	177	212	-	-
	Spst5g00986	379	ProSiteProfiles	Trp-Asp (WD) repeats profile.	131	173	IPR001680	GO:0005515
	Spst5g00986	379	Gene3D	-	25	375	IPR015943	GO:0005515
	Spst5g00986	379	PANTHER	POLYCOMB PROTEIN	7	376	-	-
	Spst5g00986	379	PRINTS	G protein beta WD-40 repeat signature	151	165	IPR020472	-
	Spst5g00986	379	PRINTS	G protein beta WD-40 repeat signature	260	274	IPR020472	-
	Spst5g00986	379	PRINTS	G protein beta WD-40 repeat signature	197	211	IPR020472	-
	Spst5g00986	379	SUPERFAMILY	WD40 repeat-like	33	372	IPR036322	GO:0005515
	Spst5g00986	379	SMART	WD40_4	331	372	IPR001680	GO:0005515
	Spst5g00986	379	SMART	WD40_4	167	210	IPR001680	GO:0005515
	Spst5g00986	379	SMART	WD40_4	124	164	IPR001680	GO:0005515
	Spst5g00986	379	SMART	WD40_4	236	273	IPR001680	GO:0005515
	Spst5g00986	379	SMART	WD40_4	285	326	IPR001680	GO:0005515
	Spst5g00986	379	FunFam	polycomb group protein FIE1	26	375	-	-
	Spst5g00986	379	ProSiteProfiles	Trp-Asp (WD) repeats profile.	177	212	IPR001680	GO:0005515
	Spst5g00986	379	ProSitePatterns	Trp-Asp (WD) repeats signature.	151	165	IPR019775	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst5g00986	Spst-Chr5	9542392	9548966	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst5g00986	K11462		-	gmx:100795288	691.419

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst5g00986	5	9542392	9548966	Spst5g00986	5	9542392	9548966	ECH