Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00975 ATGTGGAGAGATCCGGGAATTTCAGCTGATTCTTTCTATGAAATCCGCCCTGAATGCACCGATGTTCCGATTTCTCGATTTAAAATCAAGGCTGGTAAAACACTAAGTGCAAGAAAATGGCATTCTGCATTTACTTCAGAAGGATATCTAGATATAGGCAAGACTCTGCCCCGAATCTACCTCAGTGCACCTGGGAACTCTAGCTTGCTGGAAAAACATAAGGGAGTCCATCCATCAATTAGGGGAGAAGTTTGGGAATTTCTACTTGGTTGCTTTGATCCCGTGAGTACATTTGAGCAAAGAGATGAGATAAGACATCGCCGAAGAATTCAATATGCTACATTGAAAGAAGAATGCCGCCAATTGTTTCCTCTCATTGGAAGTGGTAGATTTGTCACAGCACCTGTTGTTACTGAAGATGGTCAACCAATTCAAGATCCATTGGTTCTGAAAGAAACAAACTCAGCCAAGGGATTGGATGTACTTTATCAAGCTAATAATAATCATATAAGGATGGTTGCTGCAAATAGTTTAAGGCAGGTGACAGACAAGATAGTAGTCCAGTGGATGTTAACTCTCCATCAAATAGGTCTTGATGTGGTTCGCACAGATAGGACATTAGTTTTTTATGAGAAGCAAGAAAACTTGTCGAAACTATGGGATATTCTTGCTGTTTATGCTTGGATAGATAAAGACGTTGGCTATGGTCAAGGAATGTGTGACCTATGCTCCCCTATGATAATTCTTCTTGATGATGAAGCAGATGCATTTTGGTGCTTTGAGCGTTTGATGCGCAGGCTTTTTCTTATGATCTGTGCTCTTGAATTTGTAAAGCGCGGCAATTTTAGATGCACCGAGAACTCTGTTGGGGTATCATCTCAACTAAGTGATTTGGCTTCAGTTACTCAAGTAATTGATCCAAAACTTCATAAACATTTAGAGCATCTTGGTGGAGGTGACTATCTGTTTGCTTTTAGAATGCTAATGGTTTTGTTTCGAAGAGAATTCTCCTTTTGTGATTCATTGTACCTTTGGGAGATGATGTGGGCCCTGGAATATGATCCTGACTTGTTCTTGGTGTATGAAATGCCTGAATCAGTTGGGAGCTCAAAAGGGAAAACAAAGTCCATAAGTCAATGTGGAAAGTATGAGAGAGAAATTTTGAAGAGTAGATCAAAGAATGCTGCTCAAGCTCCTCTTCCTATATCTGTTTTCCTTGTTGCCAGTGTATTGAAAGATAAAAGTGCAAAACTACTCCATGAAGCACGGGGCTTGGATGATGTTGTCAAGATTTTGAATGAACTAACTGGGAATCTAGATGCCAAAAAAGCTTGCAATGGAGCTTTGAAACTTCACAAGAAATATATGAAAAAGGCCAAGAAATCCTAG 1389 0.3981 MWRDPGISADSFYEIRPECTDVPISRFKIKAGKTLSARKWHSAFTSEGYLDIGKTLPRIYLSAPGNSSLLEKHKGVHPSIRGEVWEFLLGCFDPVSTFEQRDEIRHRRRIQYATLKEECRQLFPLIGSGRFVTAPVVTEDGQPIQDPLVLKETNSAKGLDVLYQANNNHIRMVAANSLRQVTDKIVVQWMLTLHQIGLDVVRTDRTLVFYEKQENLSKLWDILAVYAWIDKDVGYGQGMCDLCSPMIILLDDEADAFWCFERLMRRLFLMICALEFVKRGNFRCTENSVGVSSQLSDLASVTQVIDPKLHKHLEHLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPDLFLVYEMPESVGSSKGKTKSISQCGKYEREILKSRSKNAAQAPLPISVFLVASVLKDKSAKLLHEARGLDDVVKILNELTGNLDAKKACNGALKLHKKYMKKAKKS 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00975 462 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 174 270 - -
Spst5g00975 462 SMART tbc_4 72 378 IPR000195 -
Spst5g00975 462 Gene3D - 288 462 - -
Spst5g00975 462 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 40 433 - -
Spst5g00975 462 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 290 455 IPR035969 -
Spst5g00975 462 ProSiteProfiles TBC/rab GAP domain profile. 75 352 IPR000195 -
Spst5g00975 462 Pfam Rab-GTPase-TBC domain 191 350 IPR000195 -
Spst5g00975 462 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 73 312 IPR035969 -
Spst5g00975 462 FunFam TBC1 domain family member 15-like 173 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00975 Spst-Chr5 9358026 9364804 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00975 - - gmx:100805808 734.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00975 5 9358026 9364804 Spst5g00975 5 9358026 9364804 ECH