Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00611 ATGGAGATTGATCTTTCTCCCCAGTTTGCGAAGACAGTTCATGGAGCCAATGGTGGGTCCTACCACACCTGGTCCCCCTCTCAGCTTCCCATGCTTCGCGAAGGCAACATTGGTGCAGCCAAACTCTCTCTGCGCAAAAACGGTTTCGCCCTTCCTCGTTACTCTGACTCTTCCAAGGTCGCTTATGTTCTTCAAGGAAGTGGAGTGGCTGGAATAGTGCTGCCTGAATCAGAAGAGAAGGTCGTTCCAATCAACAAGGGTGATGCGCTGGCACTCCCCTTTGGTGTTGTGACATGGTGGTATAACAGGGAAGAAACTGAGTTGGTTGTTCTGTTCCTTGGGGACACTTCCAAGGCTCATAAGGCTGGTGAATTCACTGACTTTTTTCTGACTGGTTCCAATGGAATCTTCACGGGGTTTTCCACTGAGTTTGTGAGCAGGGCTTGGGACATGGAAGAGAGTGATGTCAAAACCCTTGTTGGAAAACAACCAGGCACAGGGATTGTGCAGTTGGAAGCAAACATCACACTTCCTGAGCCTAAACCAGAGCACCGGAATGGCATGGCCTTGAACTGTGAAGAGGCTCCATTGGATGTTGACATCAAGGGTGGTGGAAGGGTTGTGGTATTGAACACCAAGAATCTTCCCTTGGTTGGTGATGTTGGACTAGGGGCTGACCTTGTGAGGTTGGATGGAGGAGCAATGTGCTCTCCAGGATTCTCTTGTGATTCTGCTTTGCAGGTTACTTATATTGTCAGGGGTAGTGGCCGGGTTCAGGTTGTTGGTGTTGATGGTCGTAGGGTTTTGGAGACAACCGTAAAAGCTGGTAATTTGTTCATTGTGCCAAGGTTTTTTGTGGTCTCAAAGATTGCTGATCCAGAGGGAATGGACTGGTTCTCTATTATCACCACCCCTAATCCTATATTTACCCACTTGGCTGGAAGTTCTTCTGTGTGGAAGGCTTTATCACCATCTGTTCTGCAAGCTGCTTTCAATGTAGATTCAGAAGTGGAGCAACTGTTCCGTTCAAAGAGGACTTCCGATGCCATTTTCTTCCCTCCGCCAAGTTAG 1071 0.4846 MEIDLSPQFAKTVHGANGGSYHTWSPSQLPMLREGNIGAAKLSLRKNGFALPRYSDSSKVAYVLQGSGVAGIVLPESEEKVVPINKGDALALPFGVVTWWYNREETELVVLFLGDTSKAHKAGEFTDFFLTGSNGIFTGFSTEFVSRAWDMEESDVKTLVGKQPGTGIVQLEANITLPEPKPEHRNGMALNCEEAPLDVDIKGGGRVVVLNTKNLPLVGDVGLGADLVRLDGGAMCSPGFSCDSALQVTYIVRGSGRVQVVGVDGRRVLETTVKAGNLFIVPRFFVVSKIADPEGMDWFSIITTPNPIFTHLAGSSSVWKALSPSVLQAAFNVDSEVEQLFRSKRTSDAIFFPPPS 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00611 356 Gene3D Jelly Rolls 195 356 IPR014710 -
Spst5g00611 356 PRINTS 11-S seed storage protein family signature 211 231 IPR006044 GO:0045735
Spst5g00611 356 PRINTS 11-S seed storage protein family signature 294 312 IPR006044 GO:0045735
Spst5g00611 356 PRINTS 11-S seed storage protein family signature 316 333 IPR006044 GO:0045735
Spst5g00611 356 PRINTS 11-S seed storage protein family signature 276 291 IPR006044 GO:0045735
Spst5g00611 356 PRINTS 11-S seed storage protein family signature 258 274 IPR006044 GO:0045735
Spst5g00611 356 Pfam Cupin 199 338 IPR006045 -
Spst5g00611 356 Pfam Cupin 17 156 IPR006045 -
Spst5g00611 356 Gene3D Jelly Rolls 4 194 IPR014710 -
Spst5g00611 356 CDD cupin_11S_legumin_C 198 353 - -
Spst5g00611 356 FunFam Glycinin G1 192 356 - -
Spst5g00611 356 SUPERFAMILY RmlC-like cupins 16 345 IPR011051 -
Spst5g00611 356 CDD cupin_11S_legumin_N 4 172 - -
Spst5g00611 356 PANTHER OS03G0336100 PROTEIN-RELATED 11 355 - -
Spst5g00611 356 SMART Cupin_1_3 195 339 IPR006045 -
Spst5g00611 356 SMART Cupin_1_3 3 157 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00611 Spst-Chr5 5214023 5216219 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00611 35 347 Miscellaneous Gene Families AT2G18540 22.802 6.59e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00611 - - gmx:100795038 642.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00611 5 5214023 5216219 Spst5g00611 5 5214023 5216219 ECH
Spst5g00611 5 5214023 5216219 Spst2g02276 2 21906525 21909276 PCT