Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00515 ATAGAATCTCTGTCAGTTACTTTTCATGGACATGATTTGATAATTGATTCTGAATTGGAGCTAAACTATGGAAGACGATATGGGTTGCTTGGATTAAATGGTTGTGGAAAATCTACCCTTCTTACAGCGATAGGTTGTCGAGAGCTACCTATCCCAGATCACATGGATATTTATCACCTTACCAGAGAAATTGAAGCCTCTGACATGTCTGCATTGGAGGCTGTCATAAGCTGTGATGAGGAAAGGTTGAAATTGGAGAAAGAAGCTGAAGCTTTGGCTGCTCAGGATGATGGGGGTGGTGAAACTCTTGAACGTATTTATGAACGATTGGATGCCATCGATGCATCAACTGCAGAAAAGCGTGCTGCTGAAATTTTATTTGGTCTTGGTTTCAACAAGCAGATGCAGGCAAAGAAGACCCGTGATTTTTCTGGTGGCTGGAGAATGAGGATAGCTTTAGCACGTGCTCTATTTATGAAGCCAACAATTCTTTTACTTGATGAACCAACCAATCACCTAGATTTGGAGGCTTGTGTGTGGCTGGAAGAGAATTTGAAAATGTTTGACCGCATTCTGGTTGTGATTTCACATTCCCAGGATTTCCTTAATGGTGTCTGCACAAATATCATCCACATGCAAAATAAGAAGCTGAAGCTTTATACTGGCAATTATGATCAATATGTTCAGACACGTGGTGAGCTTGAAGAGAACCAGATGAAGCAGTACAAATGGGAGCAAGAGCAAATTGCCTCGATGAAGGACTATATAGCCCGGTTTGGTCATGGATCAGCAAAACTAGCACGCCAAGCCCAGAGTAAAGAGAAAACTCTTGCAAAAATGGAGCGGGGTGGACTCACAGAGAAGGTGGTAAGAGACAAAGTTTTGGTATTCCGCTTTGTTGATGTGGGAAAACTTCCCCCGCCTGTTCTCCAGTTTGTCGAGGTGACATTTGGTTACACTCCTGATAATCTGATCTACAAGAACCTTGATTTCGGGGTTGATTTAGACTCTAGGATTGCGCTGGTTGGACCAAATGGAGCCGGGAAGAGTACGTTACTGAAGCTAATGACTGGCGACCTGGTCCCTATAGACGGCATGGTTCGACGCCACAATCACCTTCGAATTGCACAATTTCACCAGCACTTGGCTGAAAAGCTAGACTTGGAATTGTCTGCTCTCCAGTTTATGATAAAAGAATACCCTGGAAATGAGGAGGAGAGGATGAGAGCAGCTATTGGGAAATTTGGACTGTCGGGTAAAGCGCAGGTGATGCCGATGAAGAATTTATCTGACGGGCAGAGGAGCCGCGTGATATTTGCATGGTTAGCTTATAGACAGCCTCACTTGCTACTTCTGGATGAGCCAACTAACCATTTAGACATTGAAACAATTGACTCACTGGCTGAGGCTTTGAATGAATGGGACGGTGGCATGGTGCTTGTTAGCCATGATTTTAGACTCATCAATCAAGTGGCCCACGAGATATGGGTGTGCGCTGATCAAGCTGTTACCAGATGGGAAGGTGACATCATGGATTTCAAAGAGCACTTAAGGTCAAAGGCCGGTTTATCTGACTGA 1578 0.4417 IESLSVTFHGHDLIIDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPDHMDIYHLTREIEASDMSALEAVISCDEERLKLEKEAEALAAQDDGGGETLERIYERLDAIDASTAEKRAAEILFGLGFNKQMQAKKTRDFSGGWRMRIALARALFMKPTILLLDEPTNHLDLEACVWLEENLKMFDRILVVISHSQDFLNGVCTNIIHMQNKKLKLYTGNYDQYVQTRGELEENQMKQYKWEQEQIASMKDYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVRDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRIALVGPNGAGKSTLLKLMTGDLVPIDGMVRRHNHLRIAQFHQHLAEKLDLELSALQFMIKEYPGNEEERMRAAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAYRQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQAVTRWEGDIMDFKEHLRSKAGLSD 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00515 525 ProSitePatterns ABC transporters family signature. 143 157 IPR017871 GO:0005524|GO:0016887
Spst5g00515 525 Pfam ABC transporter 326 457 IPR003439 GO:0005524
Spst5g00515 525 FunFam ATP-binding cassette sub-family F member 3 270 524 - -
Spst5g00515 525 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 520 - -
Spst5g00515 525 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 235 IPR027417 -
Spst5g00515 525 CDD ABCF_EF-3 1 216 - -
Spst5g00515 525 FunFam Abc transporter f family member 1 1 263 - -
Spst5g00515 525 Gene3D - 278 523 IPR027417 -
Spst5g00515 525 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1 239 IPR003439 GO:0005524
Spst5g00515 525 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 310 525 IPR003439 GO:0005524
Spst5g00515 525 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 293 504 IPR027417 -
Spst5g00515 525 Pfam ABC transporter 18 171 IPR003439 GO:0005524
Spst5g00515 525 CDD ABCF_EF-3 310 501 - -
Spst5g00515 525 SMART AAA_5 335 523 IPR003593 GO:0016887
Spst5g00515 525 SMART AAA_5 23 225 IPR003593 GO:0016887
Spst5g00515 525 Gene3D - 4 263 IPR027417 -
Spst5g00515 525 Pfam ABC transporter 210 286 IPR032781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00515 Spst-Chr5 4116063 4118512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00515 19 197 Calmodulin-binding Proteins AT2G36910 27.869 5.35e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00515 K06185 - gmx:100785099 996.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00515 5 4116063 4118512 Spst5g00515 5 4116063 4118512 ECH
Spst5g00515 5 4116063 4118512 Spst11g01312 11 37545774 37549080 PCT