Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00483 ATGGCGGCTGCGGCTGCGGATTTGGCAATCTCCGTCTGGTTGTTGGTGGCGGCGGCGGCGGTTGCTGCCGGATCGCCGGCCACTCTGACACTGGAAAGAGCGTTTCCAACGAATCATGGAGTGGAGTTGAATCAGCTGAGAGCTCGCGACGAGCTGAGGCATCGCAGAATGTTGCAGTCTTCAAACGGCGTGGTAGATTTTTCTGTCCAAGGCACCTACGATCCCTTCCAAGTCGGGCTCTACTTTACAAAGGTACAGTTGGGTACTCCTCCAGTGGAATTTAATGTGCAGATTGACACTGGCAGTGATGTCCTCTGGGTTAGTTGTAACTCCTGCAGTGGTTGTCCTCAAACAAGTGGGCTTCAGATACAGCTAAATTTTTTTGACCCCGGGAGTTCATCAACATCTTCACTGATCGCTTGTTCTGACCAAAGGTGCAGTAGTGGGATACAATCATCAGATGCCAGCTGTTCCAGTCAGAACAACCGGTGCTCATACACTTTCCAGTATGGAGATGGCAGTGGGACATCAGGCTATTATGTGTCAGATATGATGCATTTGAACACTATTTTTGAGGGATCTGTGACCACTAATTCTACAGCGCCTGTTGTTTTTGGTTGTAGCAACCAGCAGACTGGGGACTTGACAAAGTCTGATAGAGCAGTTGATGGAATATTTGGATTTGGGCAACAGGAATTGTCTGTCATCTCCCAGCTCTCCTCACAAGGGATAGCTCCAAGAGTATTCTCCCACTGTCTGAAAGGAGATAGCAGTGGAGGGGGTATATTGGTTCTTGGTGAGATTGTGGAGCCAAACATTGTTTACAGCTCACTTGTTCCATCACAGCCTCATTACAATTTAAATCTACAGAGCATCTCTGTCAATGGCCAAACATTGCAAATTGATTCATCAGTTTTTGCAACATCAAACAACAGAGGTACAATTGTTGATTCTGGAACAACTTTGGCGTACCTTGCTGAAGAGGCTTATGATCCCTTTGTCAATGCGATTACAGCTACAATTCCACAATCTGTACGCACTGTCGTTTCCAAGGGAAATCAGTGTTACTTAATCACCACTAGTGTCACTGACGTTTTTCCTCAAGTAAGTCTGAACTTTGCTGGTGGGGCATCTATGCTTTTAAGACCACAGGATTACCTGATACAGCAGAATTCTATTGGTGGTGCAGCAGTGTGGTGTATTGGCTTTCAGAAAATCCAGGGTCAAGGAGTAACAATTCTAGGAGATCTCGTATTAAAAGACAAAATTGTTGTTTATGATCTGGCTGGTCAACGCATTGGATGGGTTAACTATGACTGTTCTTTGTCAGTGAATGTCTCTGCATCAACTGGCACTGGCAGAAGTGAATTCGTGAATGCTGGAGAATTAGGTGGAAGCATTTCTTTACGTGATGGACTTCAGTTGACGAAGACAGGGTTCTTGGCTTTCTTTGTGCATCTAACACTAATTTACTGCCTTGGATTCTTATAG 1491 0.4547 MAAAAADLAISVWLLVAAAAVAAGSPATLTLERAFPTNHGVELNQLRARDELRHRRMLQSSNGVVDFSVQGTYDPFQVGLYFTKVQLGTPPVEFNVQIDTGSDVLWVSCNSCSGCPQTSGLQIQLNFFDPGSSSTSSLIACSDQRCSSGIQSSDASCSSQNNRCSYTFQYGDGSGTSGYYVSDMMHLNTIFEGSVTTNSTAPVVFGCSNQQTGDLTKSDRAVDGIFGFGQQELSVISQLSSQGIAPRVFSHCLKGDSSGGGILVLGEIVEPNIVYSSLVPSQPHYNLNLQSISVNGQTLQIDSSVFATSNNRGTIVDSGTTLAYLAEEAYDPFVNAITATIPQSVRTVVSKGNQCYLITTSVTDVFPQVSLNFAGGASMLLRPQDYLIQQNSIGGAAVWCIGFQKIQGQGVTILGDLVLKDKIVVYDLAGQRIGWVNYDCSLSVNVSASTGTGRSEFVNAGELGGSISLRDGLQLTKTGFLAFFVHLTLIYCLGFL 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00483 496 Gene3D Acid Proteases 268 447 IPR021109 -
Spst5g00483 496 CDD pepsin_A_like_plant 81 440 IPR034161 -
Spst5g00483 496 PRINTS Pepsin (A1) aspartic protease family signature 87 107 IPR001461 GO:0004190|GO:0006508
Spst5g00483 496 PRINTS Pepsin (A1) aspartic protease family signature 412 427 IPR001461 GO:0004190|GO:0006508
Spst5g00483 496 PRINTS Pepsin (A1) aspartic protease family signature 314 325 IPR001461 GO:0004190|GO:0006508
Spst5g00483 496 ProSiteProfiles Peptidase family A1 domain profile. 81 436 IPR033121 -
Spst5g00483 496 FunFam Aspartic proteinase-like protein 2 268 447 - -
Spst5g00483 496 Pfam Xylanase inhibitor C-terminal 284 435 IPR032799 -
Spst5g00483 496 Gene3D Acid Proteases 57 267 IPR021109 -
Spst5g00483 496 SUPERFAMILY Acid proteases 76 443 IPR021109 -
Spst5g00483 496 Pfam Xylanase inhibitor N-terminal 81 266 IPR032861 -
Spst5g00483 496 PANTHER ASPARTYL PROTEASES 25 434 IPR001461 GO:0004190|GO:0006508
Spst5g00483 496 FunFam Aspartic proteinase-like protein 2 64 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00483 Spst-Chr5 3839359 3843643 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00483 55 441 Miscellaneous Gene Families AT1G44130 26.866 7.51e-42 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00483 - - gmx:100791299 915.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00483 5 3839359 3843643 Spst5g00483 5 3839359 3843643 ECH
Spst5g00483 5 3839359 3843643 Spst11g01254 11 37004400 37008973 PCT