Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00478 ATGGCTTCGCCACGACTAGATCTGGACGGCAACCTCATAAACCCAATCACCATTTGCATGATTGGTGCCGGTGGCTTCATCGGCTCCCACCTCTGCGAGAAGCTCATGTCCGAAACCCCTCACAAGGTTCTCGCCTTGGATGTCTACAACGACAAGATCAAGCACTTATTGGAACCCGACACGCTCCCTTGGGCTGGTCGCATCCAATTCCACCGCCTCAACATCAAGCACGATTCCCGACTCGAAGGCCTCATTAAGATCGCAGATCTGACCATTAATCTGGCTGCTATATGCACTCCCGCGGATTACAACACGCGCCCTCTTGACACCATTTACAGCAACTTCATCGACGCGCTTCCTGTGGTGAAGTACTGTTCGGAAAACAACAAGCGTCTCATTCACTTCTCTACGTGTGAAGTGTATGGGAAAACTATTGGAAGCTTTCTCCCCAAAGACAGTGCACTTCGTCAGGATCCTGCATACTATGTACTTAAGGAGGATGAGTCTCCTTGTATTTTTGGTTCAATTGAAAAGCAGAGATGGTCATATGCTTGTGCTAAGCAGTTGATTGAGAGGCTGATTTATGCTGAGGGCGCTGAAAATGGCTTGGAATTCACAATTGTGAGGCCTTTTAATTGGATTGGACCACGAATGGATTTCATACCTGGCATTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTGGCATGCTTTAGCAATAATCTCCTCCGTGGAGAGCCCCTCAAGCTTGTGGATGGTGGCCAATCCCAGAGAACCTTTGTGTATATTAAGGATGCTATTGAAGCTGTCTTGTTGATGATTGAAAATCCTGCCAGGGCCAATGGACAGATTTTTAATGTGGGTAACCCAAACAATGAGGTTACAGTTAGGCAGCTTGCTGAAATGATGACTCAGGTTTATTCAAAGGTAAGTGGAGAAGCACCTCTGGAAAAACCTACTATTGATGTGAGCTCCAAAGAATTTTATGGTGAGGGATATGATGATAGTGACAAGAGAATTCCTGATATGACTATAATTAATAGGCAACTTGGCTGGAATCCTAAGACCTCACTTTGGGACCTGCTTGAATCCACTCTGACCTATCAGCACAGAACTTATGCTGAAGCCATCAAGAAAGCCATTGCAAAGCCCGTGGCAAGTTAA 1164 0.4639 MASPRLDLDGNLINPITICMIGAGGFIGSHLCEKLMSETPHKVLALDVYNDKIKHLLEPDTLPWAGRIQFHRLNIKHDSRLEGLIKIADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSALRQDPAYYVLKEDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRGEPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPARANGQIFNVGNPNNEVTVRQLAEMMTQVYSKVSGEAPLEKPTIDVSSKEFYGEGYDDSDKRIPDMTIINRQLGWNPKTSLWDLLESTLTYQHRTYAEAIKKAIAKPVAS 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00478 387 PANTHER BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA 17 372 - -
Spst5g00478 387 FunFam UDP-D-apiose/UDP-D-xylose synthase 2 16 379 - -
Spst5g00478 387 Pfam NAD dependent epimerase/dehydratase family 18 288 IPR001509 -
Spst5g00478 387 Gene3D - 16 379 - -
Spst5g00478 387 CDD Arna_like_SDR_e 17 372 IPR045869 GO:0016831
Spst5g00478 387 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 17 370 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00478 Spst-Chr5 3795067 3797391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00478 14 328 Miscellaneous Gene Families AT1G02000 21.965 1.74e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00478 K12449 - gmx:100792879 764.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00478 5 3795067 3797391 Spst5g00478 5 3795067 3797391 ECH
Spst5g00478 5 3795067 3797391 Spst11g01248 11 36937642 36939980 PCT