Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00441 ATGGCGTCCCAAGCAAGCCTCCTCCTTCAGAAGCAGCTCAAAGATCTTTGTAAAAACCCTGTCGATGGATTTTCTGCTGGTTTGGTCGACGAAACCAACATTTTTGAATGGAGCGTCACTATAATTGGGCCTCCCGATACTCTTTATGAGGGAGGATTTTTCAATGCCATTATGAGCTTTCCACCGAACTACCCAAATAGTCCGCCATCAGTGAAATTCACCTCTGAGATATGGCATCCAAATGTTTATCCTGATGGGCGAGTTTGCATATCAATTCTTCATCCTCCTGGTGATGATCCAAATGGTTACGAGCTTGCAAGTGAGCGCTGGATGCCTGTTCATACAGTAGAAAGTATAGTACTAAGTATCATATCGATGCTCTCTAGTCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCGAAAGAGTGGAGAGACAGGAGAGATGAATTCAAGAAAAAAGTTAGCCGTTGCGTGCGGAAGTCGCAAGAAATGTTGTGA 501 0.4391 MASQASLLLQKQLKDLCKNPVDGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPPNYPNSPPSVKFTSEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAKEWRDRRDEFKKKVSRCVRKSQEML 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00441 166 CDD UBCc 17 159 IPR000608 -
Spst5g00441 166 SUPERFAMILY UBC-like 3 162 IPR016135 -
Spst5g00441 166 Pfam Ubiquitin-conjugating enzyme 9 158 IPR000608 -
Spst5g00441 166 Gene3D Ubiquitin Conjugating Enzyme 2 166 IPR016135 -
Spst5g00441 166 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 163 - -
Spst5g00441 166 SMART ubc_7 7 164 - -
Spst5g00441 166 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Spst5g00441 166 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 164 IPR000608 -
Spst5g00441 166 FunFam ubiquitin-conjugating enzyme E2 7 2 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00441 Spst-Chr5 3479741 3483563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00441 11 131 Miscellaneous Gene Families AT3G17000 32.308 2.30e-13 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00441 K10575 - gmx:100500474 313.923
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00441 5 3479741 3483563 Spst5g00441 5 3479741 3483563 ECH
Spst5g00441 5 3479741 3483563 Spst2g02289 2 22072219 22076929 PCT