Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00407 ATGATTAGCCTTATTCCTTCATCAGTGCCATTTTCTGTCGCAACTCTCTTTTTCTCTAGCTTCCTTTGGACCATTCCTGAGGTTGTGCTGTCTGCTACTTCAAACTATGGAGGCGTTACTTGGCATTATCAGTTCGATATAAGGCTTAAAAACGTTACTAGGCTGTGCCACACCAAGAGCATGATTACTGTAAATGGGAAGTTCCCGGGACCTCGCGTTAGTGCTAGAGAAGGAGACAGATTAGTGGTTAAGGTGATGAACCATGTTCCAAACAATATCACCATCCATTGGCACGGAGTGAGACAGCTTAGGAGTGGATGGTCGGATGGACCATCGTACATAACTCAATGTCCCGTACAAAGTGGTCAGAGTTATGTGTACAACTTCAGCTTGGTAGGGCAAAGAGGAACTCTCTTCTGGCATGCACACCACTCGTGGTTAAGGGCTACTCTCTATGGACCCCTCGTCATCCTCCCAAGGCGCAACGAATCTTACCCATTTGCCAAACCCTACAAAGAATTTCCCATCCTCTTTGGAGAGTGGTGGAATGTGGATCCGGAGGCTGTGATTGCACAAGCTCTTCACACAGGGGGTGGTCCAAATGTCTCTGATGCCTACACCATTAACGGACATCCTGGGCCCCTCTACAATTGCTCCAATAATGATACATTCAGTCTAAAGGTGAAACCAGGGAAGACATATCTTCTGCGTTTGATCAACGCTGCAGTGAATAATGAACTATTTTTCAGCATAGCAAACCACACCTTGACAGTTGTTGAAGCTGATGCTGCATATGTTAAACCATTCAACTCCAACATCATCGTCATTGGTCCAGGACAAACAACAAACGTGGTGTTGAAGACAAAACCTGAGTACATAGGTTCTACTTTCTTCATGCTAGTGAGACCATTTTTCACTGGTATGGGTACCTTCGACAATTCCACGTTAGCTGGCATTCTAGAATATGACAACGACGCCCCTCTTTCAGAATCAGAGTTGAAAAACCGTACCCTATTTAAACCAACCCTTCCTGCTATCAACGATGCATCCTTTGTTGCGAAATTCGGAAGTAAGTTTCGCAGTTTGAACAGTGCAAAGTACCCTGCGAATGTGCCTCAAAACGTTGACAGGAGTTTCTTCTTCACGATTGGTCTTGGGAGCATTCCCTGTCCGAGAAACCAAACATGTGAAGGACCTAATAAGAGATCTAAATTCGCTGCTTCCATGAACAACATATCTTTCACTCTTCCTTCGGTGGCAATTCTTCAACAACATTTCTCAGGCCAGGATAACAGTGGTGTTTACACAACGGACTTCCCAGTTGTTCCTCTGAGACCTTTTAACTACACGGGAACTCCACCGAATAACACCATGGTGAAGAGTGGAACCAAGGTGGTGGTGATACCCTACAACACCAGAGTGCAGGTTGTGTTGCAGGACACTAGCATTTTGGGAGCAGAGAGTCATCCGTTACATCTTCATGGGTTCAATATGTTCGTGGTTGGTCAAGGTTTCGGGAACTTTGATCCTATCTCAGACCCTCGCAACTTTAATCTGGTCGACCCAGTTGAGAGGAACACCATTGGTGTGCCTTCTGGTGGTTGGGTTGCAATTCGCTTTTCCGCTGACAACCCAGGTGTTTGGCTGATGCATTGCCACATTGATGTGCACCTGAGTTGGGGGTTGAGGATGGCTTGGATTGTGAACAACGGAAAACTCTCTCATCAGAAGTTGCCTCCTCCACCGTCTGATCTCCCAAAGTGTTGA 1767 0.4607 MISLIPSSVPFSVATLFFSSFLWTIPEVVLSATSNYGGVTWHYQFDIRLKNVTRLCHTKSMITVNGKFPGPRVSAREGDRLVVKVMNHVPNNITIHWHGVRQLRSGWSDGPSYITQCPVQSGQSYVYNFSLVGQRGTLFWHAHHSWLRATLYGPLVILPRRNESYPFAKPYKEFPILFGEWWNVDPEAVIAQALHTGGGPNVSDAYTINGHPGPLYNCSNNDTFSLKVKPGKTYLLRLINAAVNNELFFSIANHTLTVVEADAAYVKPFNSNIIVIGPGQTTNVVLKTKPEYIGSTFFMLVRPFFTGMGTFDNSTLAGILEYDNDAPLSESELKNRTLFKPTLPAINDASFVAKFGSKFRSLNSAKYPANVPQNVDRSFFFTIGLGSIPCPRNQTCEGPNKRSKFAASMNNISFTLPSVAILQQHFSGQDNSGVYTTDFPVVPLRPFNYTGTPPNNTMVKSGTKVVVIPYNTRVQVVLQDTSILGAESHPLHLHGFNMFVVGQGFGNFDPISDPRNFNLVDPVERNTIGVPSGGWVAIRFSADNPGVWLMHCHIDVHLSWGLRMAWIVNNGKLSHQKLPPPPSDLPKC 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00407 588 FunFam Laccase 171 365 - -
Spst5g00407 588 NCBIfam laccase 40 588 IPR017761 GO:0046274|GO:0048046|GO:0052716
Spst5g00407 588 PANTHER MULTI-COPPER OXIDASE 41 575 IPR045087 -
Spst5g00407 588 CDD CuRO_2_LCC_plant 174 322 IPR034285 -
Spst5g00407 588 CDD CuRO_1_LCC_plant 43 159 IPR034288 GO:0005507
Spst5g00407 588 SUPERFAMILY Cupredoxins 37 186 IPR008972 -
Spst5g00407 588 Pfam Multicopper oxidase 448 571 IPR011706 GO:0005507|GO:0016491
Spst5g00407 588 Gene3D - 171 365 IPR008972 -
Spst5g00407 588 CDD CuRO_3_LCC_plant 434 571 IPR034289 GO:0005507
Spst5g00407 588 ProSitePatterns Multicopper oxidases signature 1. 546 566 IPR033138 -
Spst5g00407 588 Pfam Multicopper oxidase 49 160 IPR011707 GO:0005507
Spst5g00407 588 Gene3D - 27 159 IPR008972 -
Spst5g00407 588 FunFam Laccase 29 159 - -
Spst5g00407 588 Pfam Multicopper oxidase 173 324 IPR001117 -
Spst5g00407 588 Gene3D - 393 588 IPR008972 -
Spst5g00407 588 ProSitePatterns Multicopper oxidases signature 2. 551 562 IPR002355 GO:0005507
Spst5g00407 588 SUPERFAMILY Cupredoxins 368 588 IPR008972 -
Spst5g00407 588 SUPERFAMILY Cupredoxins 167 362 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00407 Spst-Chr5 3264676 3267126 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00407 K05909 - gmx:100811833 981.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00407 5 3264676 3267126 Spst2g02322 2 22591007 22594128 PCT