Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00298 ATGTTCGGACTCATCGGGAACAAGGGTCACAAGATTAAGGGGACAATGGTGATCATGCGAAAGAATGTGTTGGATATCAACAGCATCACAAGTGTGTCGGGAGTGATCGGAACCGGAATCAACATCATTGGTGGTGTTGTTGACGTTGTCACTGCTCTTGCTTCCCACATCTCCATTCAGCTCATTAGTTCTACTAAGACTGATGCACAAGGGAAAGGAAAGGTTGGAAAGGCGACAAATTTAAGAGGACAGGTATCATTGCCAACGTTGGGAGCTGGCGAGGATGCATATGATGTTCATTTTGAATGGGACAGTGATTTCGGGATTCCTGGTGCATTTTACATTAAGAACTTCATGCAAGTTGAGTTCTACCTCAAGTCCCTAGTACTCGAAGACATTCCCAACCACGGAACCATTCACTTCGTCTGCAACTCCTGGGTTTACAATTCCAAAGTCTACAAGACTGATCGCATTTTCTTTGCCAACAATACATATCTTCCAAGCGAGACCCCAGCTGCACTTGTGAAGTACAGAGAAGAAGAGTTGAATACTGTAAGAGGGGATGGAACTGGAGAACGCAAGGAATGGGATAGGATTTATGATTATGATGTCTACAATGACTTGGGTAACCCAGATAGCAATGAAAAGTACGCTCGTCCCGTTCTTGGAGGTTCTGCCTTACCTTATCCTCGTAGAGGAAGAACCGGAAGGGGAAAAACTAAAAAAGATCCTAACAGTGAGAAGCCCAGCGACTTTGTTTACCTTCCACGAGATGAAGCATTTGGTCACTTGAAGTCATCCGATTTTCTCACTTATGGACTGAAATCTGTAGCCCAAGATGTGTTGCCTGTGTTGACTGATGCGTTCGATGGAAATGTTTTGAGCCTTGAGTTTGATAATTTCGCGGAAGTGCACAAGCTTTATGAAGGTGGAATTACATTGCCTACAAACTTTCTTAGCAAAATCGCCCCTCTACCTGTGATAAAGGAGATTTTTCGAACTGATGGCGAACAGTTCCTCAAGTATCCACCACCTAAAGTCATGCAAGTGAATAAGTCTGCGTGGATGACTGATGAAGAATTTGCAAGAGAAACCATTGCTGGTGTTAATCCAAATGTCATCAAGATTCTTGAGTTTGAACGCACTTTGCTTTTCAAATATGAGATTGCTATCCTCATCCATCACATGCTAAATTTATCCCAGGAATTCCCACCACGAAGCAAGCTAGATACTCAAGCCTATGGTGATCATACTTCCATCATAACGAAAGAACATTTGGAGCCAAACTTAGGTGGGCTCACTGTTGAGCAGGCTATTAGTAGCAAGAAGTTGTTCATTTTGGATCACCATGACTATCTCATTCCATATTTGAGGAGAATAAATTCAGCTACCACAAAGACTTATGCTACAAGAACCATATTTTTCTTGAAAAGTGATGGAACTTTGACACCATTGGCCATTGAGTTAAGTAAGCCTCATCCTCAGGGTGACGAATATGGTCCTCTTGGCGAAGTCTACGTGCCTTCGAGCGAAGGAGTTGAAGCCTACATTTGGTTATTGGCTAAGGCTTACGTTGTTGTGAATGACTCGTGCTACCATCAACTTGTTAGCCATTGGCTAAACACTCATGCAGTTGTTGAACCATTCATCATAGCAACAAACAGGCAACTGAGTGTGGTTCACCCTATTTACAAACTCCTGTTTCCTCACTATCGTGACACCATGAACATTAATTCACTTGCCCGCAAGGCCTTGGTCAATGCAGACGGTATTATAGAGAAAACATTCTTGTGGGGAAGATACGCTTTGGAGATGTCCGCTGTGATTTATAAGGACTGGTCTCTCCATGATCAAGCATTGCCTAATGATCTTGTCAAGAGGTAA 1884 0.4299 MFGLIGNKGHKIKGTMVIMRKNVLDINSITSVSGVIGTGINIIGGVVDVVTALASHISIQLISSTKTDAQGKGKVGKATNLRGQVSLPTLGAGEDAYDVHFEWDSDFGIPGAFYIKNFMQVEFYLKSLVLEDIPNHGTIHFVCNSWVYNSKVYKTDRIFFANNTYLPSETPAALVKYREEELNTVRGDGTGERKEWDRIYDYDVYNDLGNPDSNEKYARPVLGGSALPYPRRGRTGRGKTKKDPNSEKPSDFVYLPRDEAFGHLKSSDFLTYGLKSVAQDVLPVLTDAFDGNVLSLEFDNFAEVHKLYEGGITLPTNFLSKIAPLPVIKEIFRTDGEQFLKYPPPKVMQVNKSAWMTDEEFARETIAGVNPNVIKILEFERTLLFKYEIAILIHHMLNLSQEFPPRSKLDTQAYGDHTSIITKEHLEPNLGGLTVEQAISSKKLFILDHHDYLIPYLRRINSATTKTYATRTIFFLKSDGTLTPLAIELSKPHPQGDEYGPLGEVYVPSSEGVEAYIWLLAKAYVVVNDSCYHQLVSHWLNTHAVVEPFIIATNRQLSVVHPIYKLLFPHYRDTMNINSLARKALVNADGIIEKTFLWGRYALEMSAVIYKDWSLHDQALPNDLVKR 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00298 627 PRINTS Lipoxygenase signature 533 550 IPR013819 GO:0016702|GO:0046872
Spst5g00298 627 PRINTS Lipoxygenase signature 553 573 IPR013819 GO:0016702|GO:0046872
Spst5g00298 627 PRINTS Lipoxygenase signature 515 532 IPR013819 GO:0016702|GO:0046872
Spst5g00298 627 ProSitePatterns Lipoxygenases iron-binding region signature 2. 560 570 IPR020834 GO:0016702|GO:0046872
Spst5g00298 627 Gene3D - 396 529 - -
Spst5g00298 627 ProSitePatterns Lipoxygenases iron-binding region signature 1. 533 547 IPR020833 GO:0016702|GO:0046872
Spst5g00298 627 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 164 627 IPR013819 GO:0016702|GO:0046872
Spst5g00298 627 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 9 165 IPR036392 GO:0005515
Spst5g00298 627 SUPERFAMILY Lipoxigenase 166 627 IPR036226 -
Spst5g00298 627 PRINTS Plant lipoxygenase signature 468 492 IPR001246 GO:0016491
Spst5g00298 627 PRINTS Plant lipoxygenase signature 402 421 IPR001246 GO:0016491
Spst5g00298 627 PRINTS Plant lipoxygenase signature 196 212 IPR001246 GO:0016491
Spst5g00298 627 PRINTS Plant lipoxygenase signature 131 149 IPR001246 GO:0016491
Spst5g00298 627 PRINTS Plant lipoxygenase signature 228 247 IPR001246 GO:0016491
Spst5g00298 627 PRINTS Plant lipoxygenase signature 157 178 IPR001246 GO:0016491
Spst5g00298 627 Pfam Lipoxygenase 395 627 IPR013819 GO:0016702|GO:0046872
Spst5g00298 627 Pfam Lipoxygenase 174 378 IPR013819 GO:0016702|GO:0046872
Spst5g00298 627 PANTHER LIPOXYGENASE 10 627 IPR000907 GO:0016702|GO:0034440|GO:0046872
Spst5g00298 627 Pfam PLAT/LH2 domain 62 160 IPR001024 GO:0005515
Spst5g00298 627 Gene3D - 265 353 IPR027433 -
Spst5g00298 627 Gene3D - 530 627 - -
Spst5g00298 627 CDD PLAT_LH2 10 162 IPR042057 -
Spst5g00298 627 Gene3D PLAT/LH2 domain 2 165 - -
Spst5g00298 627 FunFam Lipoxygenase 166 264 - -
Spst5g00298 627 SMART LH2_4 10 162 IPR001024 GO:0005515
Spst5g00298 627 Gene3D - 166 264 - -
Spst5g00298 627 ProSiteProfiles PLAT domain profile. 36 161 IPR001024 GO:0005515
Spst5g00298 627 Gene3D - 354 390 - -
Spst5g00298 627 MobiDBLite consensus disorder prediction 215 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00298 Spst-Chr5 2581838 2585168 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00298 11 627 Acyl Lipid Metabolism Gene Families AT1G55020 53.956 0.0 663
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00298 K15718 - gmx:547860 1105.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00298 5 2581838 2585168 Spst4g02217 4 62903107 62907411 PCT