Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00232 ATGGTGATCAGAGAGGAAAAGGGTGTGAAGCTTGTTCTGCTTAAATTTGGTTTGGCTTTGGCTCTTTCATTTGCTGGATTTCTCTACTCACGCTTCAGAATCAGAAGAATCAAGCCCTCCAAATCACGCAACGGGGCTAGTGTCGGTCACGATAGTGAAGTTAATTTAGGAGGAGGTATAGGGGCAGCATTAAGTACTTGCAACACCATTTCAGAGGGAAATTTTCTATGTTCTGAAGAAACATGCATCGACAGGGTGATAACTGGCAATTCTCCTCTTGCTCTCTCTCCTGACAGTACTCAAAATAGTGATAAAGATGAGTTACTCCTACCTGAATTTAATGATCTTCTTATGGACGTAGACTTTGGAGACACAGTTATCAGAACTTCCTTTAAAAAAGATATGGAAGCACCATGGTTAAAAGTATATGCAGATACTGAGAAGGATGAGTACGAGCAAGAAGTAAGTCAACTCAGGAACATGATTAGAATGCTTCAAGACAGAGAACAAAGTCTCGAGGTTCAACTGTTCGAGTACTGTGGTCTTAGAGAGCAAGAAACAGCAGTGATGGAGCTCCAAAATAGATTGAAAGCAAGCACTGTGGAGGTAAAGATGTTCAATCTGAAGGTTAAGACCTTACAGTCTGAGAATTGGAGACTAAAGGAACAGGTTGCCGATCATACAAAAGTGGTGGCTGAGCTTGAGATTGCAAAAGACGAAGTCAAATTGCTCAATAAGAAAATTAGGTATGAAGCTGAACAGAATAGGGAGCAGATCAGAAGTCTTCAACAGAAAGTTTCCACATTGCAAGACCAAGAATGCAAAGGTGCTTGTGATCAAGATATTCAAATAAAGCTGCAAAATCTAAAGTATCTTGAGTCTGAAGCAGAAGAGTTGAAGAAATCTAATTTAAGATTGCAGATAGAAAATTCTCATTTAGTTCGAAGATTGGATTCTACCCAGATCTTTGCTAATTCAGTTCCAGAAGACCCGGAGGTAGATGCTCTGAAGCAAGAGAGTGAGTGTCTCAAACAAGAAAATATGCGCTTGATGAAGGAAATTGAGCAATTACATTCTGATCGATGTTCAGATCTTGAAGAATTAGTATATATGCGGTGGATAAATGCATGCTTACGATATGAACTAAGAAATTATGAAGCCGCGCCAGGTAAAACAGTTGCAAAGGACTTAAGCAGAAGCTTAAGCCCTACGTCCGAGAGGAAAGCCAAACAGCTTATACTTGAATATGCAAATGCTGATGGACCAGGGAACATCGTCAACTTTGATATAGATCAATGGTCGTCCTCGCATTCTTCTTCTCTCACTGACTTTGGAGAATGTGATGATTTTTCTTCTGTAGATAATTCATCTGCTGCTAAAACTAACACCACAAGCCAGACCAAGCTTTTAAGCAAGCTTAGACAATTGATACAAGGCAAAGATAGTCACCGTAGTCATGTTTCATCACAAGAAAAATATGGACATCAAGATAGCAATCCTCCACGGCTACGTACATCAACTGGAATGGAGGGTCCTAGGAGTGAGTTTGCTACTCCCATTGTTACGTATAGAACTTCCCTTGATTTCTCTAGGTTTACGAGTATGCAGGAAGAAGCAAATAGGAGGAATTCAGATAGTGCTTTCATGGGAAGCTCAAGTAAATTCAGGGCACGTACGAAAGGTTCTTTCTCAGATTCCTTAGGCTTGGAAAAAAATAATTTGGAGAAATACGCAGAAGCTTTAAAAGATTCTAGCGTGAGTGCTAGACATCAAAGACGTAGAAGATCAGCATCATGTAGTTAG 1803 0.4004 MVIREEKGVKLVLLKFGLALALSFAGFLYSRFRIRRIKPSKSRNGASVGHDSEVNLGGGIGAALSTCNTISEGNFLCSEETCIDRVITGNSPLALSPDSTQNSDKDELLLPEFNDLLMDVDFGDTVIRTSFKKDMEAPWLKVYADTEKDEYEQEVSQLRNMIRMLQDREQSLEVQLFEYCGLREQETAVMELQNRLKASTVEVKMFNLKVKTLQSENWRLKEQVADHTKVVAELEIAKDEVKLLNKKIRYEAEQNREQIRSLQQKVSTLQDQECKGACDQDIQIKLQNLKYLESEAEELKKSNLRLQIENSHLVRRLDSTQIFANSVPEDPEVDALKQESECLKQENMRLMKEIEQLHSDRCSDLEELVYMRWINACLRYELRNYEAAPGKTVAKDLSRSLSPTSERKAKQLILEYANADGPGNIVNFDIDQWSSSHSSSLTDFGECDDFSSVDNSSAAKTNTTSQTKLLSKLRQLIQGKDSHRSHVSSQEKYGHQDSNPPRLRTSTGMEGPRSEFATPIVTYRTSLDFSRFTSMQEEANRRNSDSAFMGSSSKFRARTKGSFSDSLGLEKNNLEKYAEALKDSSVSARHQRRRRSASCS 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00232 600 MobiDBLite consensus disorder prediction 535 600 - -
Spst5g00232 600 Coils Coil 245 272 - -
Spst5g00232 600 Coils Coil 182 202 - -
Spst5g00232 600 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 12 516 IPR040265 -
Spst5g00232 600 Coils Coil 333 360 - -
Spst5g00232 600 Coils Coil 148 175 - -
Spst5g00232 600 MobiDBLite consensus disorder prediction 535 569 - -
Spst5g00232 600 ProSiteProfiles VHS domain profile. 208 351 IPR002014 GO:0035091|GO:0043130
Spst5g00232 600 Coils Coil 282 309 - -
Spst5g00232 600 MobiDBLite consensus disorder prediction 479 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00232 Spst-Chr5 2048809 2051496 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00232 - - gmx:100796238 842.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00232 5 2048809 2051496 Spst5g00232 5 2048809 2051496 ECH
Spst5g00232 5 2048809 2051496 Spst4g02298 4 63711287 63714274 PCT