Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00161 ATGCGCATCTCCAAAGCTTCCTTCTACACTCTCCTCCTTCACAAACCTTACCACCGTGAAAACCTCGTCGTTTTATCGCGGCGTCGTGTTATCACCTGCGCGCTGAGTGTGGCGCTGGTCCTGACCACGCTCTACGTTTTGTGGCCGTCGAATCCAGATCTGAAGATCGTGGGGCTGAAGCTGAGGCGGATAAAGGTGCACCCTGTGCCGCCCATCACCGTCGACATTTCCATGCTGCTGACGCTGCGGGTGCGCAACGCTGACGTGTACTTCATGGACTTGGGTGCGGTGAACGTGGCAGTGGCGTACAGAGGGAAGATGCTGGGGCACGTGAGGTCGAGGGAGGTGCACGTGAGGGCAAGGGGGTCTTCCTACGTGGACGCTGACGTGGAATTTGCAGGCATAAGCGTGGTGCCTGAGCTGGTGGTGCTGCTTGAGGACGTGGCGAAAGGCATCGTACCCTTTCACACAGATAGCCAGACTATGGGCCAATTGGGCCTTTTCCTCTTTCACTTCCCCATGAAGGCAAAAGTATCGTGCGAGGTTGTGGTGAGTGTTATAAACCACACTATTATTCGTCAACATTGTCTCCACGAGTTTTTCACCATGAGCCTTGAAAATTGTCACTCTGTTCATGACAAAAAAAACAAGAGAAGTTGGTCAAGTTATGTGAGAATTTTCTGCACTCCCTTTGTGTGTGTGGATAATTTAATGACAAGATTCAAGATTCCAAACTGGACAACATTTTGGAGGAAGATCAAGAGGGAAAAGAGTAGGCTGTTCAATGCTTCACCAGCAGTTCTTGTCCAATACGACCCCAATTCCTACTCACAGAACTTTGATGATGGCTATTCCAACGACCCTGATAACCTTTCTCGCTCATTCTCAGCCCGATTTGCGGTCCCCTCCAAGATCTTTGACAAGGGTGAAACAGTGTGCAATGGTGAAAAATTATGA 957 0.5016 MRISKASFYTLLLHKPYHRENLVVLSRRRVITCALSVALVLTTLYVLWPSNPDLKIVGLKLRRIKVHPVPPITVDISMLLTLRVRNADVYFMDLGAVNVAVAYRGKMLGHVRSREVHVRARGSSYVDADVEFAGISVVPELVVLLEDVAKGIVPFHTDSQTMGQLGLFLFHFPMKAKVSCEVVVSVINHTIIRQHCLHEFFTMSLENCHSVHDKKNKRSWSSYVRIFCTPFVCVDNLMTRFKIPNWTTFWRKIKREKSRLFNASPAVLVQYDPNSYSQNFDDGYSNDPDNLSRSFSARFAVPSKIFDKGETVCNGEKL 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00161 318 Pfam Late embryogenesis abundant protein 81 177 IPR004864 -
Spst5g00161 318 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 34 196 - -
Spst5g00161 318 SUPERFAMILY LEA14-like 37 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00161 Spst-Chr5 1519737 1523270 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00161 - - gmx:100792375 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00161 5 1519737 1523270 Spst5g00161 5 1519737 1523270 ECH
Spst5g00161 5 1519737 1523270 Spst4g02367 4 64250452 64251231 PCT