Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00119 ATGAAGTTTGATTTTTATTACTTGTTTCATAATGTTGTAACATGGAAATTGCGGTTAGTAAGAATAGCGTGCAGAGAAGAAATGATGAGCAGAGCAGGAGACTGGAACTGCAGGTCATGCCAGCACCTCAACTTTCAGAGGCGCGAGTCTTGCCAACGTTGTGGGGATTTAAAAGGTGGAGAGGGGAAGGATTATGGTGGTTTTGGAGGATCACCATCTGGGTTTGGTACTGAGTCAAATGTTCGACCAGGTGACTGGTACTGTGATGCATCTAACTGTGCTGCTCATAACTTTGCTAGCCGGACAAGCTGTTTCAACTGTGGTGCTTTCAAGAACGAGTTAGCTGCTGCTGACAGTTCAAGCTCAAGAACCTCTGGTGGTGCTGGGAGACCTGGATGGAAGTCTGGTGATTGGATATGCAACAGATCAGGATGCAATGAACACAACTTCGCTAGCAGAGTGGAATGTTTTAAATGCTCTGCTCCAAGGGGCACGCACTAG 501 0.4651 MKFDFYYLFHNVVTWKLRLVRIACREEMMSRAGDWNCRSCQHLNFQRRESCQRCGDLKGGEGKDYGGFGGSPSGFGTESNVRPGDWYCDASNCAAHNFASRTSCFNCGAFKNELAAADSSSSRTSGGAGRPGWKSGDWICNRSGCNEHNFASRVECFKCSAPRGTH 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00119 166 FunFam Ran-binding zinc finger protein 76 113 - -
Spst5g00119 166 ProSitePatterns Zinc finger RanBP2-type signature. 138 159 IPR001876 -
Spst5g00119 166 Gene3D - 25 59 - -
Spst5g00119 166 Gene3D - 76 113 - -
Spst5g00119 166 Gene3D - 130 165 - -
Spst5g00119 166 ProSiteProfiles Zinc finger RanBP2 type profile. 134 165 IPR001876 -
Spst5g00119 166 PANTHER ZINC FINGER PROTEIN 80 163 - -
Spst5g00119 166 SMART zf_4 33 57 IPR001876 -
Spst5g00119 166 SMART zf_4 84 110 IPR001876 -
Spst5g00119 166 SMART zf_4 136 162 IPR001876 -
Spst5g00119 166 SUPERFAMILY Ran binding protein zinc finger-like 27 59 IPR036443 -
Spst5g00119 166 ProSiteProfiles Zinc finger RanBP2 type profile. 31 60 IPR001876 -
Spst5g00119 166 FunFam Ran-binding zinc finger protein 127 165 - -
Spst5g00119 166 ProSitePatterns Zinc finger RanBP2-type signature. 86 107 IPR001876 -
Spst5g00119 166 Pfam Zn-finger in Ran binding protein and others 31 55 IPR001876 -
Spst5g00119 166 Pfam Zn-finger in Ran binding protein and others 134 163 IPR001876 -
Spst5g00119 166 Pfam Zn-finger in Ran binding protein and others 82 109 IPR001876 -
Spst5g00119 166 SUPERFAMILY Ran binding protein zinc finger-like 78 112 IPR036443 -
Spst5g00119 166 SUPERFAMILY Ran binding protein zinc finger-like 128 164 IPR036443 -
Spst5g00119 166 ProSiteProfiles Zinc finger RanBP2 type profile. 82 113 IPR001876 -
Spst5g00119 166 ProSitePatterns Zinc finger RanBP2-type signature. 35 54 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00119 Spst-Chr5 1108821 1109780 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00119 - - gmx:100499847 209.534
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02401 4 64498645 64499426 Spst5g00119 5 1108821 1109780 ECH
Spst5g00119 5 1108821 1109780 Spst5g00119 5 1108821 1109780 ECH
Spst5g00119 5 1108821 1109780 Spst4g02401 4 64498645 64499426 PCT