Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03421 ATGGTCTCCAGTGTAATAACGGTGAGGTTCCTGCCACGTCAATGGTTGCCTCCAATTTCTTCAACTTGCGACGCACGTGAGCTTCGGTGCACACGTCAATTTAACAAAGCTTGGCTAATGAAGAGTGGAACATTGCACTTCCAACTTCAGCTTCACTTCTCCATTGTTCCACTCGCCATGTTTCTTCTCAAGACATGGAGACAAACTGCTTTTGGTGTTTTTGGGTACCTAAATTTCACCAAAGCTGGTTTCCTTAATCATTCTAAGAATTTCAAACCAGAGGACATGGAAATACAAATAACTGGGAAGAATTGCATTGTTACCGGTGCTAACTCTGGAATTGGCTATGCAACGGCTGAGGGTCTAGCAAAGCGTGGTGCTACTGTCTATCTTGTATGTCGTAATAAGGAGAAAGGAGAGGCTGCTCTTTCTGATATTCGAACTAGAACTGGCAACCAAAATGTTTTTTTGGAGATTTGTGACCTTTCTTCTGTCAATGAGATCAAGTCATTCACTTCCAGGTTTTCTGAAAGGAATGTGCCACTTCATGTGTTGGTTAACAATGCTGGCATACTTGAGCAAAACCGAGTTACCACACCAGAAGGGTATGAATTGAACTTTGCTGTAAATGTATTAGGCACGTACATCATGACAGAATTAATGGTTCCAGTGCTGGAGAAAGCTTCCTCTGATGCACGTGTCATTACAGTTTCTTCTGGTGGAATGTATACTTCTCCATTGACCAAAGATCTGCAGTATTCCAAGAGCAACTTTAATGGGGTTGAACAGTATGCTCAAAACAAGCGTGTTCAGGTGGCACTGACAGAGAAGTGGGCCAAAACATATAAGAACAAAGGCATAGGATTTTACTCAATGCACCCAGGCTGGGCTGAGACCCCTGGGGTTGCAAAGAGTTTGCCAAACTTCTCTAAATCGTTTTCAGGGAAGCTTAGAACAAGTGAAGAAGGTGCAGACACAGTTATATGGTTGACATTACAACCAAAGGAGAAACTGGTATCAGGTGCTTTTTATTTTGATAGAGCTGAAGCTCCAAAGCACCTTGCATTTGCTGCTACCAGTAATTCTCATGCTATGATCGACTCTGTAGTTGATAGTCTTGATTCCATGGCTTCTGCTTTTGGCTAA 1146 0.4258 MVSSVITVRFLPRQWLPPISSTCDARELRCTRQFNKAWLMKSGTLHFQLQLHFSIVPLAMFLLKTWRQTAFGVFGYLNFTKAGFLNHSKNFKPEDMEIQITGKNCIVTGANSGIGYATAEGLAKRGATVYLVCRNKEKGEAALSDIRTRTGNQNVFLEICDLSSVNEIKSFTSRFSERNVPLHVLVNNAGILEQNRVTTPEGYELNFAVNVLGTYIMTELMVPVLEKASSDARVITVSSGGMYTSPLTKDLQYSKSNFNGVEQYAQNKRVQVALTEKWAKTYKNKGIGFYSMHPGWAETPGVAKSLPNFSKSFSGKLRTSEEGADTVIWLTLQPKEKLVSGAFYFDRAEAPKHLAFAATSNSHAMIDSVVDSLDSMASAFG 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03421 381 PANTHER DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 12 60 379 - -
Spst4g03421 381 PRINTS Glucose/ribitol dehydrogenase family signature 264 283 IPR002347 -
Spst4g03421 381 PRINTS Glucose/ribitol dehydrogenase family signature 313 333 IPR002347 -
Spst4g03421 381 PRINTS Glucose/ribitol dehydrogenase family signature 104 121 IPR002347 -
Spst4g03421 381 PRINTS Glucose/ribitol dehydrogenase family signature 180 191 IPR002347 -
Spst4g03421 381 PRINTS Glucose/ribitol dehydrogenase family signature 285 302 IPR002347 -
Spst4g03421 381 Pfam short chain dehydrogenase 103 304 IPR002347 -
Spst4g03421 381 Gene3D - 89 376 - -
Spst4g03421 381 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 96 346 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03421 Spst-Chr4 74595822 74604067 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03421 92 272 Acyl Lipid Metabolism Gene Families AT3G06060 27.895 2.37e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03421 K11168 - gmx:100775215 603.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03421 4 74595822 74604067 Spst4g03421 4 74595822 74604067 ECH