Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03325 ATGCAGAAATTTGAAATGGGTAGTAACTTTCTGAAAATCTTGTTTGCAATGTTAGTGTGCTTTTTGCATAGCAAAGCATCCACTCTTGGATTCATCTCGCCATCACAGAGTACACATGTGAAATGCATTGACAGGGAGAGAGAAGCACTCCTCAACTTCAAACGTGGCCTCACGGATGTCTCTGGCATTCTGTCTAGTTGGAGGGATGATGGCAATAGAACTGATTGCTGCAAATGGAAAGGCATTCAGTGTAACAATGAAACAGGTCATGTGCAAATACTTGATCTTCGTGGATCAATAATGCATTATTTGATAGGTTCAATGAATCTTACTTCATTGATTGACTTGCAAAATATGGAATATTTGGATCTCAGTTCCAATAGTGTTCCTAGTGGTAGTCAAATCCCACAGGAGATGGGCTCCTTCAAAAATTTAAGATATCTTAATCTATCATATGCGTGTTTTGTTTGGGGAATCCCTTCTCAACTGGGAAATCTCTCAAAGTTGAAGTATCTTGATCTAAAAGGAACTGATCTTCATGGAGCAATCCCTTCTCAACTGGGAAATCTCTCAATGTTGGAGTATCTTGATCTTAAAGGAAATCTTCTCACTGGAGCAATCCCTTCTCAACTTGGGAACCTTACAAGATTGCGATATTTAGATCTAAGTGAAAATTTTCTCCAAGGAGAAATGCCTTATCAACTAGGAAATCTCACACACTTGAGGTATCTTGATTTTACTGAAAATTCATTTTCTGGAGCACTCCCTTTTCAGGTTGGGAATCTTCCTCTCTTGCACACTCTTAAATCTGATCTTAGTATTGGTGATGCAAAGTGGCTATTTTCCCTCTCTTCATTAGCAACTCTTAGCTTGACGTCGTTGCCTAATTTTTGCCCTTCTTGTCACCTGATCCATGAGCTTATTCCAAACTTAAGGGAGTTGAGGCTAGTTAATTGCAACCTTTCCGATAATGATATTTCATCTTTGTTTCGTTCTGATTCCAAATTTTCCACTTCCCTTACTATCCTTGATCTCTCTGGAAATGATTTGACTTCATCAACGTTTCAGTTATTGGTCAACTTCAGCTCCAAACTACAAGAACTTCATCTGACACGTTGCGGCCTTACTGACGAAAGCTTTCTTGTGTCATCTGCTTCCATTAAAAAGTCTCTGCGTTCTCTTGTCACTCTTGATCTCTCCTTTAATCGATTAAACTCACCGACTATATTTCATTGGATTTTCAACTACACTTCCAATCTTCATACCCTTTCACTTCAACATAACTGGTTAGAAGGTCCCATTCCAAATGGATTTGGGGAAGTAATTAACTCTCTTGAACATCTTGACCTCTCTTTTAACGAATTGCAAGGTGAGATTCCGGCTTCCCTTGGGAATATATACACATTGCAAGAACTAGACCTAAGGAGCAACAACTTGATCTTTACATCTTTGAGGAATTTAGATCTTTCCAATAATCAGTTAATCGGAGAAATACCAAAAAGCATTGGGTTGCTTTATGAGTTGCAGTCTCTTCACCTAGAGGAGAATTACTTGGAGGATCTTTCTGATGCTGGGATTAATGACTTTGTACCAGAATGGTTCTGGAACAAGTTACAGATTATAAGTGAGATGAATATTTCTTACAACGGTCTCCGAGGTACAATTCCGAATTTACCAATCAAGTTCGTTGAAGATTTAACAATTATTTTCATTCTAAAATCAAATAAACTTGAAGGTGAAATTCCGGCCTTTTTGTCACAAGTAGACACATTGGATCTTTCCTACAATAATATTTCGGATTTAAATGCATTCTTGTGCGGAAAAATAACAACTGTGCGCATTTTGGATTTGTCAAATAATCAAATTGTAGGACAACTGCCCGACTGTTGGGAACATCTAAATCCATTAGAATTTCTTGATTTGAGCAATAATAAATTGTCAGGGGAGATTCCACAGTCCATGGGTACTCTTGCTAATTTGGCAGCTTTGGTCTTACGGAACAATAATTTAATTGGACAACTGCCTTCCACATTGAAGAATTGTACTTCTTTGATTATATTTGACATGAGTCAAAATTTGTTGTCTGGTCCAATACCGTTGTGGATTGGAGAAAATCTTCGACGATTGAAAATCTTGACCTTGAGAGTAAATCGCTTCGTTGGAAGTGTTCCTGTCCAAATCTGTTATTTGGAACAAATTCATCTCTTGGATCTTTCCAGGAATCACTTATCAGGAGGAATTCCAACCTGTCTCAGGAATTATACCGCAATGATGAAAAGGAGCATAATTTCAGGACAAATTGTAAGGAGACGAGACATTTCAATTGAAGGCACATACTTTGGTATTTATGATCGCTTTAACGTGGTGCTGATGTGGAAAGGTCAGGATTATGTGTTTTGGAATCCTCAGGTTCTTCTAAGCAGCATTGATCTATCAAGTAATAATTTGACTGGTGCAATACCTAAAGAGATTGGATATTTACTCGGATTAGTTTCTTTGAATTTATCAAGAAACAAATTAGATGGAGAAATTCCTTCAGAGATTGGGAATTTAAATTTGTTAGAATTCCTGGACTTATCAAGAAATGATTTCTCTGGCAATATTCCTTATACTCTTTCCAACATTGATCGTCTTGGAGTGTTAGACCTATCAAACAATAATCTCAGCGGAAGAATTCCTGGGGGAAGACATTTGCAAACCTTTGATGCCTCTAGTTTTGAAGGAAATATTGATCTTTGCGGCGAGCAACTTAACAAAAGTTGTACAGGAGATGAGAGAACAGTACAACCTGAAGGAGTAGCAATGGATGGAGAAAATGGGAATTTAGGTTTCTATGGAGCACTATACATGATCTTGGGACTAGGATTCTTTACAGGCTTTTGGGGTTTACTAGGGCCAATTCTACTTTGTCGAGCGTGGAGATTTGCCTACGTCAAATTCTTGGACAGAGTGGTGGACTATATTCTTGTAATGGTTGAAGTGAACGTTGGCAAGTTTCATCGGTGGCTCAAAGCCTAG 3018 0.381 MQKFEMGSNFLKILFAMLVCFLHSKASTLGFISPSQSTHVKCIDREREALLNFKRGLTDVSGILSSWRDDGNRTDCCKWKGIQCNNETGHVQILDLRGSIMHYLIGSMNLTSLIDLQNMEYLDLSSNSVPSGSQIPQEMGSFKNLRYLNLSYACFVWGIPSQLGNLSKLKYLDLKGTDLHGAIPSQLGNLSMLEYLDLKGNLLTGAIPSQLGNLTRLRYLDLSENFLQGEMPYQLGNLTHLRYLDFTENSFSGALPFQVGNLPLLHTLKSDLSIGDAKWLFSLSSLATLSLTSLPNFCPSCHLIHELIPNLRELRLVNCNLSDNDISSLFRSDSKFSTSLTILDLSGNDLTSSTFQLLVNFSSKLQELHLTRCGLTDESFLVSSASIKKSLRSLVTLDLSFNRLNSPTIFHWIFNYTSNLHTLSLQHNWLEGPIPNGFGEVINSLEHLDLSFNELQGEIPASLGNIYTLQELDLRSNNLIFTSLRNLDLSNNQLIGEIPKSIGLLYELQSLHLEENYLEDLSDAGINDFVPEWFWNKLQIISEMNISYNGLRGTIPNLPIKFVEDLTIIFILKSNKLEGEIPAFLSQVDTLDLSYNNISDLNAFLCGKITTVRILDLSNNQIVGQLPDCWEHLNPLEFLDLSNNKLSGEIPQSMGTLANLAALVLRNNNLIGQLPSTLKNCTSLIIFDMSQNLLSGPIPLWIGENLRRLKILTLRVNRFVGSVPVQICYLEQIHLLDLSRNHLSGGIPTCLRNYTAMMKRSIISGQIVRRRDISIEGTYFGIYDRFNVVLMWKGQDYVFWNPQVLLSSIDLSSNNLTGAIPKEIGYLLGLVSLNLSRNKLDGEIPSEIGNLNLLEFLDLSRNDFSGNIPYTLSNIDRLGVLDLSNNNLSGRIPGGRHLQTFDASSFEGNIDLCGEQLNKSCTGDERTVQPEGVAMDGENGNLGFYGALYMILGLGFFTGFWGLLGPILLCRAWRFAYVKFLDRVVDYILVMVEVNVGKFHRWLKA 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03325 1005 Gene3D Ribonuclease Inhibitor 42 205 IPR032675 -
Spst4g03325 1005 Gene3D Ribonuclease Inhibitor 522 929 IPR032675 -
Spst4g03325 1005 PRINTS Leucine-rich repeat signature 636 649 - -
Spst4g03325 1005 PRINTS Leucine-rich repeat signature 875 888 - -
Spst4g03325 1005 FunFam Nuclear pore complex protein NUP107 43 205 - -
Spst4g03325 1005 Pfam Leucine Rich Repeat 444 465 IPR001611 GO:0005515
Spst4g03325 1005 Pfam Leucine Rich Repeat 483 502 IPR001611 GO:0005515
Spst4g03325 1005 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 604 696 - -
Spst4g03325 1005 ProSiteProfiles Leucine-rich repeat profile. 483 505 IPR001611 GO:0005515
Spst4g03325 1005 Gene3D Ribonuclease Inhibitor 206 277 IPR032675 -
Spst4g03325 1005 Gene3D Ribonuclease Inhibitor 442 481 IPR032675 -
Spst4g03325 1005 Pfam Leucine Rich repeat 337 351 IPR001611 GO:0005515
Spst4g03325 1005 Pfam Leucine Rich repeat 362 378 IPR001611 GO:0005515
Spst4g03325 1005 SUPERFAMILY L domain-like 444 552 - -
Spst4g03325 1005 Gene3D Ribonuclease Inhibitor 300 441 IPR032675 -
Spst4g03325 1005 Pfam Leucine rich repeat N-terminal domain 44 85 IPR013210 -
Spst4g03325 1005 PANTHER LRR RECEPTOR-LIKE KINASE 172 258 - -
Spst4g03325 1005 Pfam Leucine rich repeat 806 864 IPR001611 GO:0005515
Spst4g03325 1005 Pfam Leucine rich repeat 587 646 IPR001611 GO:0005515
Spst4g03325 1005 Pfam Leucine rich repeat 193 250 IPR001611 GO:0005515
Spst4g03325 1005 SUPERFAMILY L domain-like 89 478 - -
Spst4g03325 1005 Gene3D Ribonuclease Inhibitor 482 521 IPR032675 -
Spst4g03325 1005 SUPERFAMILY L domain-like 574 914 - -
Spst4g03325 1005 SMART LRR_typ_2 338 360 IPR003591 -
Spst4g03325 1005 SMART LRR_typ_2 391 412 IPR003591 -
Spst4g03325 1005 SMART LRR_typ_2 116 142 IPR003591 -
Spst4g03325 1005 SMART LRR_typ_2 190 214 IPR003591 -
Spst4g03325 1005 SMART LRR_typ_2 827 851 IPR003591 -
Spst4g03325 1005 SMART LRR_typ_2 585 606 IPR003591 -
Spst4g03325 1005 SMART LRR_typ_2 633 657 IPR003591 -
Spst4g03325 1005 SMART LRR_typ_2 238 262 IPR003591 -
Spst4g03325 1005 SMART LRR_typ_2 481 504 IPR003591 -
Spst4g03325 1005 SMART LRR_typ_2 442 466 IPR003591 -
Spst4g03325 1005 SMART LRR_typ_2 505 528 IPR003591 -
Spst4g03325 1005 ProSiteProfiles Leucine-rich repeat profile. 877 899 IPR001611 GO:0005515
Spst4g03325 1005 SMART LRR_sd22_2 633 662 - -
Spst4g03325 1005 SMART LRR_sd22_2 337 370 - -
Spst4g03325 1005 SMART LRR_sd22_2 214 246 - -
Spst4g03325 1005 SMART LRR_sd22_2 116 137 - -
Spst4g03325 1005 SMART LRR_sd22_2 466 489 - -
Spst4g03325 1005 SMART LRR_sd22_2 585 603 - -
Spst4g03325 1005 SMART LRR_sd22_2 391 422 - -
Spst4g03325 1005 SMART LRR_CC_2 481 510 IPR006553 -
Spst4g03325 1005 SMART LRR_CC_2 337 361 IPR006553 -
Spst4g03325 1005 SMART LRR_CC_2 362 386 IPR006553 -
Spst4g03325 1005 SMART LRR_CC_2 308 332 IPR006553 -
Spst4g03325 1005 FunFam Tyrosine-sulfated glycopeptide receptor 1 697 926 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03325 Spst-Chr4 73197911 73201114 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03325 316 951 Receptor kinase-like Gene Family AT4G13920 28.152 1.91e-29 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03325 - - vum:124844896 1274.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03325 4 73197911 73201114 Spst4g03325 4 73197911 73201114 ECH