Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03322 ATGGACTCCTTCAAAAATTTGAGATATCTCAATCTATCATGGTCCACTTTTGCTGGGAGTATTCCTTATGCACTGGGAAATCTCTCAAAGTTGGAGTATCTTGATCTAAGTAACAGTTATCGTCTTCGTGGAAAAATTCCCTCTCAACTAGGGAAACTTACAAATTTACGATATTTAGATCTAAGTTACAATTATCTCCATGGAGAAATCCCTTATCAACTTGGGAATCTATCACAATTGAGGTATCTTGTTCTTTGGCAGATTTCACTTTCTGGAGCAATACCTTTTCAGGTTGGGAATCTTCCTTTCTTGAAATTTCTTAGACTTGGAGGTAATTTTGATATATCAATCAAGGATGCAACATGGCTCTCTTCACTCTCTTCATTAGATACTCTTGGCCTGATGTTATTGCCTCTTGACTCCTCTTATCACTGGCTAAAAACGATTCGAGAGATTATTCCTAACTTACGAGAGTTGAGATTAGTTGGTTGTAGTCTTTCAGATGATAATATTTCATATTTGTTTCATTTTCATTCCGACCTTTCCACTTCTCTTTCCTTCATTGATCTCTCTGATAATATGTTGACATCATCAACATTTCAATTGTTGTTCAACTATAGCCTTCATCTCCAAAAGCTTTATCTTTCTCATAATAATATTGTCTCTCCATCACCTCACTATCCAAACTTTCCTTCTCTCATGACCCTTGATCTCTCCGAAAACAATATGACATCATGGATATTTCAAGGAAATTTAAACTTCAGCTCCAGACTACAAAATCTTCATCTACAAGATTGCGGTCTTACTGATAAAAGTTTTCTTTTGCCATCCGCTTCAATAAGAACTTCCTCATCTTCTCTTGTCACCCTTGATCTCTCTGATAACCTGTTGAAATCATCGACTATATTTCACTGGGTTTTCAACTTTACCCCCAATCTTCATAGCCTTAGGCTTGATCGTAACACGTTAGAAGGTCTCCTTCCAAATGGATTTGGGAATGTAATGAACTCTCTAGAAGTTCTTACCCTATCTTCCAACAACCTGCAGGGTGACATCCCAGCTTCTCTAGGTTATATATGTACATTGCATGATTTAGAACTTAGCGATAACAAATTCAGTGGGAAAATTTATAGTTTCATTCAAAATTCTTCATGGTACAACAGACTAGAGAATCTAGATTTATCTCATAACTGGATTTCTGGCATGGTTCCTAATCTGTCAAGTTTTACATCATTGAGTAGCTTGGATATTTCCCATAATCAGTTAAGTGGAGAAATACCGAAAACCATTGGGTTGTTACAGGAATTGGAGTTTCTTAACTTAGAGGATAATTACTTAGTGGGTGATATCAATGAATTGCATCTCATAAATTTGTCTAAATTGGAGATGTTAGGCTTGACAGACAACTCTTTGTCCCTAAAGTTTGCTACCACCTGGGTTCCACCTTTCCAATTACTTCGTTTGGGACTATCTGCTTGCAAGTGTGGTCCTAGTTTCCCAAGTTGGCTCCAAACTCAAAGTCACTTGGAGTTTCTTGATATTTCTGATGCTGAGATTGACGACTTTGTGCCCGAATGGTTTTGGAATAAGTTACAGTCTATAAGTCAGCTGAACATGTCTCACAACAGTCTTAAAGGTACAATTCCAAATTTACCAATCAAGCTTACTGGTGGTTATGATACAGAATTTATATATCTAAGTTTTAATCAACTTGAAGGTGAAATTCCTGCTTTTTTATCACAAGCTTACATATTGGATCTATCCAACAATAAGATTTCAGATTTAAACATGTTCTTGTGCCGAAAAAGCGAAACCACAAGGATGCAAACTTTGGATTTATCAAATAATCAAATAATGGGACAACTGCCTAGCTGTTGGGAACATCTAAAAAGATCATTAAACTTTCTTGATCTCAGAAATAATAAATTGTCAGGGAAGATTCCACAGTCTATGGGTACTCTTGTTAATTTGCAATCTTTGGTTCTACGAAACAACAGTTTAATTGGAGAGTTACCATTCACATTGACAAGCTGCACTAAATTAGTTATATTAGATGTGGGTGAAAATTTTTTGTCTGGTGCTATACCTTCATGGGTTGGAGAAAATCTACAACAACTGGAAATTTTGAGCTTGCGAGTAAATAACTTATCTGGAAGTGTTCCAGTTCATCTCTGCTATTTGAGGCAAATTCGTCTCTTGGATCTTTCAAGGAATCACTTGTCAGGAGGAATTCCAACATGTCTAAAGAATTTTACTGCAATGATGGAAAGGGGAGTTGTTGCAATTGGACGAGAAATGTCCCCAAAAATGTCATTTCAATCGAATTCATATGGATCGCGTGATACTGAGATTTTAATCATGTGGAAAGGTCAGGATTATGAATTTTGGAATCCTGAGTATCTTCTGAAGAGCATTGATCTCTCAGGTAATGAATTGACAGGGGAAATACCAAAAGAGTTAGGGTATTTACTTGGATTAGTTTCTTTGAATTTATCAAGAAACCACTTTCATGGAGAAATTCCTCGCGAGATCGGAAATTTAGATTCGCTAGAATTTCTAGACTTATCAAGAAATAATTTTTCAGGCAATATTCCTTCTACTCTTTCCAACATTGATCGTCTTGGGATGTTAGACCTATCACACAATAATCTCAGTGGAAGAATCCCTTGGGGAAGGCATTTGCAAACCTTTGATGCCTCTAGTTTTGAAGGAAATATTGATCTTTGTGGAGAGCAACTTAAGAAAAGTTGTCCAGGAGATGAGAAAACAATACAACCTCAAGAAGTAGCAATTGATGGTGTAAATGGCAATTCAGCTTTCTATGGAGCATTGTACATAAGCTTGGGACTAGGATTCTTTACAGGCTTTTGGGGTTTACTAGGGCCAATTCTACTTTGGCGACCATGGAGATTTGCTTACATCAGATTCTTGAACAGACTGGTGGACAATGTACTTGTAACGGTTGAAATTAATGTTCCCAAGTTCAATCGGTGGCTCAAAGCCTAG 3006 0.3679 MDSFKNLRYLNLSWSTFAGSIPYALGNLSKLEYLDLSNSYRLRGKIPSQLGKLTNLRYLDLSYNYLHGEIPYQLGNLSQLRYLVLWQISLSGAIPFQVGNLPFLKFLRLGGNFDISIKDATWLSSLSSLDTLGLMLLPLDSSYHWLKTIREIIPNLRELRLVGCSLSDDNISYLFHFHSDLSTSLSFIDLSDNMLTSSTFQLLFNYSLHLQKLYLSHNNIVSPSPHYPNFPSLMTLDLSENNMTSWIFQGNLNFSSRLQNLHLQDCGLTDKSFLLPSASIRTSSSSLVTLDLSDNLLKSSTIFHWVFNFTPNLHSLRLDRNTLEGLLPNGFGNVMNSLEVLTLSSNNLQGDIPASLGYICTLHDLELSDNKFSGKIYSFIQNSSWYNRLENLDLSHNWISGMVPNLSSFTSLSSLDISHNQLSGEIPKTIGLLQELEFLNLEDNYLVGDINELHLINLSKLEMLGLTDNSLSLKFATTWVPPFQLLRLGLSACKCGPSFPSWLQTQSHLEFLDISDAEIDDFVPEWFWNKLQSISQLNMSHNSLKGTIPNLPIKLTGGYDTEFIYLSFNQLEGEIPAFLSQAYILDLSNNKISDLNMFLCRKSETTRMQTLDLSNNQIMGQLPSCWEHLKRSLNFLDLRNNKLSGKIPQSMGTLVNLQSLVLRNNSLIGELPFTLTSCTKLVILDVGENFLSGAIPSWVGENLQQLEILSLRVNNLSGSVPVHLCYLRQIRLLDLSRNHLSGGIPTCLKNFTAMMERGVVAIGREMSPKMSFQSNSYGSRDTEILIMWKGQDYEFWNPEYLLKSIDLSGNELTGEIPKELGYLLGLVSLNLSRNHFHGEIPREIGNLDSLEFLDLSRNNFSGNIPSTLSNIDRLGMLDLSHNNLSGRIPWGRHLQTFDASSFEGNIDLCGEQLKKSCPGDEKTIQPQEVAIDGVNGNSAFYGALYISLGLGFFTGFWGLLGPILLWRPWRFAYIRFLNRLVDNVLVTVEINVPKFNRWLKA 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03322 1001 SMART LRR_typ_2 579 600 IPR003591 -
Spst4g03322 1001 SMART LRR_typ_2 310 333 IPR003591 -
Spst4g03322 1001 SMART LRR_typ_2 847 871 IPR003591 -
Spst4g03322 1001 SMART LRR_typ_2 335 359 IPR003591 -
Spst4g03322 1001 SMART LRR_typ_2 230 250 IPR003591 -
Spst4g03322 1001 SMART LRR_typ_2 53 77 IPR003591 -
Spst4g03322 1001 SMART LRR_typ_2 409 433 IPR003591 -
Spst4g03322 1001 SMART LRR_typ_2 654 678 IPR003591 -
Spst4g03322 1001 SMART LRR_typ_2 823 846 IPR003591 -
Spst4g03322 1001 SMART LRR_typ_2 703 727 IPR003591 -
Spst4g03322 1001 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 383 474 - -
Spst4g03322 1001 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 551 759 - -
Spst4g03322 1001 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 799 917 - -
Spst4g03322 1001 SUPERFAMILY L domain-like 3 321 - -
Spst4g03322 1001 PRINTS Leucine-rich repeat signature 412 425 - -
Spst4g03322 1001 PRINTS Leucine-rich repeat signature 727 740 - -
Spst4g03322 1001 Gene3D Ribonuclease Inhibitor 1 39 IPR032675 -
Spst4g03322 1001 Gene3D Ribonuclease Inhibitor 40 144 IPR032675 -
Spst4g03322 1001 Gene3D Ribonuclease Inhibitor 455 920 IPR032675 -
Spst4g03322 1001 SUPERFAMILY RNI-like 253 550 - -
Spst4g03322 1001 PANTHER LRR RECEPTOR-LIKE KINASE 40 258 - -
Spst4g03322 1001 FunFam Leucine-rich repeat receptor protein kinase EMS1 1 87 - -
Spst4g03322 1001 ProSiteProfiles Leucine-rich repeat profile. 388 410 IPR001611 GO:0005515
Spst4g03322 1001 Gene3D Ribonuclease Inhibitor 226 454 IPR032675 -
Spst4g03322 1001 SUPERFAMILY L domain-like 563 911 - -
Spst4g03322 1001 Gene3D Ribonuclease Inhibitor 145 225 IPR032675 -
Spst4g03322 1001 Pfam Leucine rich repeat 6 66 IPR001611 GO:0005515
Spst4g03322 1001 Pfam Leucine rich repeat 311 372 IPR001611 GO:0005515
Spst4g03322 1001 Pfam Leucine rich repeat 680 740 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03322 Spst-Chr4 73147221 73150226 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03322 287 975 Miscellaneous Gene Families AT1G74190 32.139 4.98e-83 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03322 - - var:108344212 1390.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03322 4 73147221 73150226 Spst4g03322 4 73147221 73150226 ECH