Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03320 ATGCTGTCCACATGGAGGGATGATGGCAGTAACAGAGATTGCTGCAAATGGAGAGGCATTCAATGCAACAATGAAACAGGTGACGTACGAATACTTGATCTTCGTGGTTCCAAAATGCATTTTTTGACAGGTTCAATCAATCTTACTCCATTGATTGACTTAGAAAACATGGAATATTTGGATCTTAGCAATAATTATGATTATAGTTGGAGTCATCTTCCTCAACACTTGGGCTACATCAAAAGCTTAAGATATCTCAATCTATCACAAGTAAATTTTTACGGGGGGATTCCCTATGAACTGGGAAATCTCTCAAAGTTGGAGTATCTTGATCTTAAAGGAAATTCTCTCAATGGTACAATCCCTTCTCAACTTGGAAACCTTACAAGTTTACGATATCTTGATCTAAGTGACAATTATTATCTCCAAGGAGAAATTCCTAATCAACTTGGAAATCTCCCACAGTTGAAGTATCTTGATCTTGGGTTTACATTACTTTCTGGAGCAATCCCTTTCCGGGTTGGTAATCTTCCTCTCTTGCATACTCTTAGACTTGGTGGAAGTTTTGATCTTACAGTTAGTGATGCAAAGTGGCTATCTTCTCTCTCTTTATTAACAACTTTTGGTCTCGATTCATTGCTTAATCTTGCTTACTCTCGTCACTGGCTACAAGTGATTAGTGAGCTTGTTTCAAACTTAAGAGAGTTGAGTCTAGTGCGTTGTAGTCTTTCAGATAAGGATGTTTCATCTTTGTTTCCTTCTCATTCTAACCTTTCCACTTCTCTTTCCATCCTTGATCTCTCTGATAATATGTTGACAGCATCAACATTTCAATTGTTGTTCAACCACAGCCATAACCTCCAAGAGCTTTATCTGCGTGGTAATAATATTGTTTTGTCGTCTCCACACTATCCACACTTTCATTCACTTGTGGTCCTTGATCTTGCTCTTAATAACCTCACATCATCAACAATTCTAGGAAATTTCAATTTCAGCTCCACACTACAAGAACTTCATCTAGAAGAGTGCAGTCTTACTGATAAAAATTTTCTTGTTCCATCTGCTTCCATACGCAAGTCTTCATCTTCTCTTGTCACCCTTGATCTCTCCTCTAATCTATTGAAATCATCGGCTATATTTCATTTGATTTCCAACTTCACCCCCAATCTTCATACACTTTCCCTTGGCGATAACATGTTAGAAGGTCCCATTCCAGCTGGATTAGGGAAAGTAATGAACTCTCTTGAAGTTCTTGCCCTTTCCTCCAACAAACTGCATGGTCAGATTCCTGCTTCCCTTGGAAATATATGCACACTACAGGAACTACACCTTAGCAATAACAACTTGAGTGGCAAAATTGCTAGCTTCATTGGAAACTCTTCCATTTTGTCATCTTTGAGGATATTAGATCTTTCCAATAATATGTTAACGGGAGAATTACCAAAAAACATTGGGTTGCTATGGGAGTTGGAAGGTCTTCACCTACAGGAGAATAATCTGGAGGGTGATATATATGAATTGCATTTCACAAATTTGTCCAAATTGATGGATTTAGACTTAACACACAACTCATTGTCTCTAAAGTTCGCAACTACCTGGATTCCACCTTTCCAGTTATTTCATATGGGACTAGCCTCTTGCAAGTTGGGTCCTAGTTTCCCCAGTTGGATCCAGACTCAAAGTCGCTTAAGCTTTCTAGATATTTCTGATGCTGAGATTGATGACTTTGTACCAGATTGGTTTTGGAACAAGTTACAGTCTATAAGTGAGATGAATATTTCTTACAACAATCTCAAAGGTTCAATTCCAAATTTACCCATCAAGATTACCAATAATGGTCATGCAGTAATACTAAATTCAAATAAACTTGAAGGTGGAGTTCCTACCTTTTTGTCACAAGTTAGCACCTTGGATCTTTCTAAAAATATGATTTCAGATTTGGATGCATTTATATGTGGAAAAGAAGAAAATACAAACATCGGCATACTTGATTTATCAAATAATCAAATAAAGGGACAACTGCCCGATTGTTGGGAAAATCTAGCTAGTTCACTAGAATTTCTTGATCTAAGCAATAATAATTTTTCAGGGAAGATTCCGAAGTCCATGGGTTATCTTGCTAATTTGGGAGCTTTGTTGTTACGGAACAACAGTTTAACTGGAGAGCTACCACACACATTAAAAAACTGCACTCATTTAGAAACACTAGACTTGAGTGAAAATTTGTTTCCTGGTCTAATACCTTCATGGATTGGAGATAGTCTACAACAACTGAAAATCTTGAGCTTGCGAACAAATCGTTTCTTTGGAAGTTTTCCAGTACATCTCTGTCATTTGAGGCAAATTCTTGTCTTGGATCTTTCAAGGAACAACTTGTCAAAAGGAATTCCAACATGCTTAAGTAATTTTACTGCAATGATGGATAGAACAGTAGTAAACAGAGATGAAATTATAGGAGGATCTTATGACTCTAACGTGTTATTGATGTGGAAAGGTCAGGAGCGCGTGTTTTTTAATCCCGAGTATCTTCTAAAGAGCATTGATCTATCAAGTAATAATTTGACTGGTGCAATACCAAAAGAGATTGGATATTTACTTGGATTAGTTTCTTTGAATTTATCAAGAAACAACTTAGATGGAGAAATTCTTTCAGAGATTGGGAATTTAAATTTGTTGGAATTTCTTGACTTATCAAGAAATCATTTCTCTGGAAAAATTCCTTCTACTCTCTCAAAAATTGATCGTCTTGCTGTGTTGAACTTATCAAACAATGATCTGAATGGAAGAATCCCTTGGGGAAGACAGTTGCAAACCTTTGATGCCTCTAGTTTTGGAGGAAATCTTGGTCTTTGTGGTGAGCAACTAAACAAAAGTTGTCCTGGAGACAAGACAATTGCAATGCCTCAAGGAACAGCAGTGGATGGTGAAGATGGCAGTTCAATTTTGTATGGAGCATTATACATTAGTTTGGGGCTAGGATTCTTCACAGGCTTTTGGGGCTTGTTAGGGTCAATACTACTTTTCCTATCATGGAGAATTGCTTACATCAGATTCTTGAACAGACTCACAGACTATATTCTTGTAATGGTTGAATTGAAGGTAGTCAAGTTCAACAGGTGGCTCAAAGGATAG 3132 0.372 MLSTWRDDGSNRDCCKWRGIQCNNETGDVRILDLRGSKMHFLTGSINLTPLIDLENMEYLDLSNNYDYSWSHLPQHLGYIKSLRYLNLSQVNFYGGIPYELGNLSKLEYLDLKGNSLNGTIPSQLGNLTSLRYLDLSDNYYLQGEIPNQLGNLPQLKYLDLGFTLLSGAIPFRVGNLPLLHTLRLGGSFDLTVSDAKWLSSLSLLTTFGLDSLLNLAYSRHWLQVISELVSNLRELSLVRCSLSDKDVSSLFPSHSNLSTSLSILDLSDNMLTASTFQLLFNHSHNLQELYLRGNNIVLSSPHYPHFHSLVVLDLALNNLTSSTILGNFNFSSTLQELHLEECSLTDKNFLVPSASIRKSSSSLVTLDLSSNLLKSSAIFHLISNFTPNLHTLSLGDNMLEGPIPAGLGKVMNSLEVLALSSNKLHGQIPASLGNICTLQELHLSNNNLSGKIASFIGNSSILSSLRILDLSNNMLTGELPKNIGLLWELEGLHLQENNLEGDIYELHFTNLSKLMDLDLTHNSLSLKFATTWIPPFQLFHMGLASCKLGPSFPSWIQTQSRLSFLDISDAEIDDFVPDWFWNKLQSISEMNISYNNLKGSIPNLPIKITNNGHAVILNSNKLEGGVPTFLSQVSTLDLSKNMISDLDAFICGKEENTNIGILDLSNNQIKGQLPDCWENLASSLEFLDLSNNNFSGKIPKSMGYLANLGALLLRNNSLTGELPHTLKNCTHLETLDLSENLFPGLIPSWIGDSLQQLKILSLRTNRFFGSFPVHLCHLRQILVLDLSRNNLSKGIPTCLSNFTAMMDRTVVNRDEIIGGSYDSNVLLMWKGQERVFFNPEYLLKSIDLSSNNLTGAIPKEIGYLLGLVSLNLSRNNLDGEILSEIGNLNLLEFLDLSRNHFSGKIPSTLSKIDRLAVLNLSNNDLNGRIPWGRQLQTFDASSFGGNLGLCGEQLNKSCPGDKTIAMPQGTAVDGEDGSSILYGALYISLGLGFFTGFWGLLGSILLFLSWRIAYIRFLNRLTDYILVMVELKVVKFNRWLKG 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03320 1043 SUPERFAMILY L domain-like 613 805 - -
Spst4g03320 1043 Gene3D Ribonuclease Inhibitor 224 461 IPR032675 -
Spst4g03320 1043 FunFam Calmodulin-binding receptor kinase CaMRLK 388 505 - -
Spst4g03320 1043 Gene3D Ribonuclease Inhibitor 462 531 IPR032675 -
Spst4g03320 1043 Pfam Leucine Rich Repeat 684 702 IPR001611 GO:0005515
Spst4g03320 1043 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 655 963 - -
Spst4g03320 1043 Pfam Leucine rich repeat 103 139 IPR001611 GO:0005515
Spst4g03320 1043 SUPERFAMILY RNI-like 306 608 - -
Spst4g03320 1043 ProSiteProfiles Leucine-rich repeat profile. 465 487 IPR001611 GO:0005515
Spst4g03320 1043 Gene3D Ribonuclease Inhibitor 1 143 IPR032675 -
Spst4g03320 1043 Gene3D Ribonuclease Inhibitor 144 216 IPR032675 -
Spst4g03320 1043 SUPERFAMILY L domain-like 830 942 - -
Spst4g03320 1043 SUPERFAMILY L domain-like 13 379 - -
Spst4g03320 1043 SMART LRR_sd22_2 463 495 - -
Spst4g03320 1043 SMART LRR_sd22_2 657 683 - -
Spst4g03320 1043 SMART LRR_sd22_2 104 130 - -
Spst4g03320 1043 SMART LRR_sd22_2 284 301 - -
Spst4g03320 1043 SMART LRR_sd22_2 631 649 - -
Spst4g03320 1043 SMART LRR_sd22_2 361 388 - -
Spst4g03320 1043 SMART LRR_typ_2 104 128 IPR003591 -
Spst4g03320 1043 SMART LRR_typ_2 631 654 IPR003591 -
Spst4g03320 1043 SMART LRR_typ_2 779 803 IPR003591 -
Spst4g03320 1043 SMART LRR_typ_2 463 487 IPR003591 -
Spst4g03320 1043 SMART LRR_typ_2 865 889 IPR003591 -
Spst4g03320 1043 SMART LRR_typ_2 412 436 IPR003591 -
Spst4g03320 1043 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 3 461 - -
Spst4g03320 1043 FunFam Nuclear pore complex protein NUP107 1 142 - -
Spst4g03320 1043 PRINTS Leucine-rich repeat signature 463 476 - -
Spst4g03320 1043 PRINTS Leucine-rich repeat signature 262 275 - -
Spst4g03320 1043 Pfam Leucine Rich repeat 437 457 IPR001611 GO:0005515
Spst4g03320 1043 Gene3D Ribonuclease Inhibitor 532 962 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03320 Spst-Chr4 73114033 73117164 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03320 306 959 Receptor kinase-like Gene Family AT4G04220 33.578 5.14e-75 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03320 - - var:108343959 1609.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03320 4 73114033 73117164 Spst4g03320 4 73114033 73117164 ECH