Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03318 ATGAATATGGAGGATATCTGGAGCATGATTTGTGGGTATTCTGGTTATTTTGAGAGTGGAATAAAGCCTTTCAGTCATGATTTCATGTTATTGAGAGATCCTTCCACACGCTTTACCCATTTGTTGGTCATTTGCTTTGACGTGCATTTGGGTTTTAGAGGAAGAATTAAGGAAAACAGACACTGTTTTTCCTCTAACTTGGTGGTTATCAGAACTCTTTCAAGGATTCACATGGTTGTTAGTAGGTTTAATCGTAAGTCTTCAGTTGAAACTGCTAACGATATTGATTCTAGCAGCTATGTAACCCCATTTTCGAAAGCTGGATTCTTTAGTCGAATGACATTTTGGTGGCTGAATCCATTGATCAAAAGAGGTAAAGAGAAAACACTTGAGGACGAGGATGTCCCAATGCTAAGAGAGTTAGATCGAGCAGAAACTTGTTACCCGATGTTCGTAAAAGAAATGAACAGACAGAAACAAAAAGAACCATCATCAGAGTCAGTTTTATGGACAATTGTTTTGTGCCACTGGAGAGAGATTTTGATATCTGGGCTCTTTGCATTCCTCATGGTACTGTCTCAGGCTGCTAGTCCTTTACTTCTAAGTGCCTTTATATCGGTTGCTGAGGGTAATGAAACTTTCAAATATGAAGGTTACGTATTGGCAATATCACTTTTCCTTATAAAGATCATTGAATCCTTCTCACAAAGGCAGTGGTATTTCCGTAGTAGACTTATAGGAATGAGGGTTAAATCACTCCTTTCTACGTGCATTTATAAAAAGCTACTAAAGCTGTCTAATGTCGCTAAATTGACACACTCTGGTGGTGAGATAATGAATTATGTGACTGTGGATGCTTATAGAATTGGAGAACTTCCATTTTGGTTTCACCAGACATGGACAACAAGCATCCAACTATGTATTGCATCGGTAATACTTTTCCATACCATTGGGCTAGCAACAATTGCCTCATTGGTAGTGATAGTTCTCACCTTGCTTTGCAATACTCCACTAGCAAAGTTACAACACAAGTTTCAGACCAAACTCATGGTGGCTCAGGATGAGAGACTGAAGGCAAGTTCTGAGGCTCTCGTGAATATGAAAGTGCTAAAACTATATGCATGGGAAACTCATTTTAAAATTGTTATAGACAAGTTACGTAATTTAGAACTCAAATTGTTATCGTCAGTGCAATTAAGAAAGGCATACAATATATTTTTGTTTTGGACTGCACCTATTTTGCCCACTGCTGCTTCTTTTTGGGCATGTTATTTCCTGAAAATTCCATTACATGCAAATAATGTTTTCACCTTTTTGGCTACTTTACGCCTTGTGCAAGAGCCTATTACAGCCATTCCAGATGTTGTTGGGGCAATCATTCAATCAAATGTTGCTTATTCCAGGATTCTTAAATTCCTCCAAGCTCCTGAACTTCAAAGTGAAGATTTAAGGAACAGGAATTCTGATGATAACATTTTAGGCTCAATTTTAATCAAATATGCTGACTTTTCATGGGAAGGTATAATGAATCAAGGCCAACATTGA 1545 0.378 MNMEDIWSMICGYSGYFESGIKPFSHDFMLLRDPSTRFTHLLVICFDVHLGFRGRIKENRHCFSSNLVVIRTLSRIHMVVSRFNRKSSVETANDIDSSSYVTPFSKAGFFSRMTFWWLNPLIKRGKEKTLEDEDVPMLRELDRAETCYPMFVKEMNRQKQKEPSSESVLWTIVLCHWREILISGLFAFLMVLSQAASPLLLSAFISVAEGNETFKYEGYVLAISLFLIKIIESFSQRQWYFRSRLIGMRVKSLLSTCIYKKLLKLSNVAKLTHSGGEIMNYVTVDAYRIGELPFWFHQTWTTSIQLCIASVILFHTIGLATIASLVVIVLTLLCNTPLAKLQHKFQTKLMVAQDERLKASSEALVNMKVLKLYAWETHFKIVIDKLRNLELKLLSSVQLRKAYNIFLFWTAPILPTAASFWACYFLKIPLHANNVFTFLATLRLVQEPITAIPDVVGAIIQSNVAYSRILKFLQAPELQSEDLRNRNSDDNILGSILIKYADFSWEGIMNQGQH 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03318 514 CDD ABC_6TM_ABCC_D1 182 469 IPR044746 GO:0140359
Spst4g03318 514 Gene3D ABC transporter type 1, transmembrane domain 152 478 IPR036640 GO:0005524|GO:0016020
Spst4g03318 514 Pfam ABC transporter transmembrane region 181 446 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g03318 514 FunFam ABC transporter C family member 10 164 477 - -
Spst4g03318 514 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 181 461 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g03318 514 SUPERFAMILY ABC transporter transmembrane region 169 469 IPR036640 GO:0005524|GO:0016020
Spst4g03318 514 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 104 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03318 Spst-Chr4 73073662 73080388 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03318 K05666 - gmx:100786761 696.041