Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03237 ATGTTGTCTCTCAGGCTAACCTCTTTCACCCACCTCTTCTCCCCGCCCTCTTCCGCCGCCATCGCGCGCCGTTCCTCCTCGATTCTGCGACGGCGCAACCACCTCCGGCAACGCCCACTCGTCGTCTCGTTCTCCGCCCAGAGCGCAGCGGCGGAGACCCAGGACCGACTCAACAACGCGAAGAACCGAGTCTCCGAGCGAGTCATCACGCCACGGTCACAGGACTTCAACGCGTGGTACCTCGACGTTATCGCCAATGCTGAGTTGGCCGATTACGGTCCGGTTCGTGGCACCATGGTCATTCGTCCCTACGGTTACGCCATTTGGGAAGCCATTCAGGAGTACTTGAATGTGAAGTTCAAGGAGACTGGGCATAGTAACATGTATTTTCCCCAGTTTATCCCCTACTCATTTATTGAGAAAGAAGCAAGTCATGTTGAGGGTTTTAGTCCAGAATTAGCTCTGGTGACAATTGGGGGTGGAAAGGAACTTGAAGAGAAGCTCGTGGTCCGTCCTACTAGTGAAACTATTGTGAATCATATGTTTACTCAATGGATCCATAGCTACCGTGATCTTCCTCTCTTGATTAATCAGTGGGCAAACGTGACAAGATGGGAGATGCGCACTAAACCATTTGTGAGAACTCTTGAATTTCTTTGGCAAGAAGGACATACTGCTCATGCAACACCAGAGGAGGCAGAGAATGAGGTGATACAGATGATTGACATCTATACCAGATTTGCGTATGAGCAAGCTGCAATACCTGTTATTACTGGTCGAAAATCTAAAGTGGAAACATTTGCTGGTGCTTGTAAGACCTATACAATTGAGGCTATGATGGGTGACAAGAAAGCATTACAAGCAGGAACCAGTCATAACCTCGGGCAAAATTTTGCACGTGCCTTTGGAACACAGTTCACAGATGAAAATGGAATTAGGGAACATGTTTGGCAGACATCATGGGCGATTAGTACCCGTTTCGTTGGAGGCATCATCATGACACATGGAGATGATGCAGGCCTAATGCTTCCCCCAAAGATTGCACCGATACAGGTGGTAATTGTACCCATTTGGAAGAAGGATGATGAAAAAGCTGCAGTTCTAAATGCAGCATCAACTGTTAAGGATGTACTTGAAAAATCTGGGATTAAAGTTAAACTTGATGACTCGGATCAAAGAACCCCTGGATGGAAATTCAATTTCTGGGAAATGAAGGGAGTTCCTCTTAGAATTGAAATTGGTCCTCGGGATGTGGCTAGTGGAAGTGTGGTAATATCCAGGAGAGATATCCCTGGGAAGCAAGGGAAAGTGTTTGGAATCTCTATGGAGCCTTCAAATTTGGAGGCTTACGTTAAAGACAAGTTGGATGAGATACAGTCATCTCTTTTGGAAAGGGCAATCGCATTTCGAGACAGTAATATCGTAGATGTGAGCACATACGATGATCTTAAAGCCGCAATATCTCAAGGAAAATGGGCAAGGGGCCCTTGGTCTGCTAGTGATGAAGATGAATTAAAAGTGAAGGAGGAAACCGGAGCAACTATCAGGTGTTTTCCTTTTGAACAGCCACAAGGGATTAAAACGTGCTTCATGACTGGTGATCCTGCTGAAGAAGTGGCTATTTTTGCCAAATCTTACTAA 1641 0.4637 MLSLRLTSFTHLFSPPSSAAIARRSSSILRRRNHLRQRPLVVSFSAQSAAAETQDRLNNAKNRVSERVITPRSQDFNAWYLDVIANAELADYGPVRGTMVIRPYGYAIWEAIQEYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLINQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAENEVIQMIDIYTRFAYEQAAIPVITGRKSKVETFAGACKTYTIEAMMGDKKALQAGTSHNLGQNFARAFGTQFTDENGIREHVWQTSWAISTRFVGGIIMTHGDDAGLMLPPKIAPIQVVIVPIWKKDDEKAAVLNAASTVKDVLEKSGIKVKLDDSDQRTPGWKFNFWEMKGVPLRIEIGPRDVASGSVVISRRDIPGKQGKVFGISMEPSNLEAYVKDKLDEIQSSLLERAIAFRDSNIVDVSTYDDLKAAISQGKWARGPWSASDEDELKVKEETGATIRCFPFEQPQGIKTCFMTGDPAEEVAIFAKSY 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03237 546 Gene3D - 345 468 IPR036621 -
Spst4g03237 546 SUPERFAMILY C-terminal domain of ProRS 474 546 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Spst4g03237 546 Hamap Proline--tRNA ligase [proS]. 69 546 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Spst4g03237 546 SUPERFAMILY Class II aaRS ABD-related 340 472 - -
Spst4g03237 546 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 163 332 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Spst4g03237 546 CDD ProRS_core_arch_euk 75 334 IPR033721 -
Spst4g03237 546 Gene3D Bira Bifunctional Protein; Domain 2 70 344 IPR045864 -
Spst4g03237 546 PANTHER PROLYL-TRNA SYNTHETASE 47 546 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Spst4g03237 546 Gene3D - 475 546 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Spst4g03237 546 PRINTS Prolyl-tRNA synthetase signature 198 206 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Spst4g03237 546 PRINTS Prolyl-tRNA synthetase signature 207 218 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Spst4g03237 546 PRINTS Prolyl-tRNA synthetase signature 168 179 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Spst4g03237 546 PRINTS Prolyl-tRNA synthetase signature 127 145 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Spst4g03237 546 FunFam Proline--tRNA ligase, chloroplastic/mitochondrial 475 546 - -
Spst4g03237 546 CDD ProRS_anticodon_zinc 340 546 - -
Spst4g03237 546 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 96 344 IPR006195 -
Spst4g03237 546 SMART ProRS_C_1_2 480 546 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Spst4g03237 546 NCBIfam proline--tRNA ligase 70 546 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Spst4g03237 546 Pfam Anticodon binding domain 351 453 IPR004154 -
Spst4g03237 546 Pfam Prolyl-tRNA synthetase, C-terminal 480 546 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Spst4g03237 546 FunFam Proline--tRNA ligase 64 344 - -
Spst4g03237 546 FunFam Proline--tRNA ligase, chloroplastic/mitochondrial 345 469 - -
Spst4g03237 546 SUPERFAMILY Class II aaRS and biotin synthetases 75 338 IPR045864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03237 Spst-Chr4 72092792 72097748 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03237 K01881 - gmx:100815508 1027.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03237 4 72092792 72097748 Spst4g03237 4 72092792 72097748 ECH