Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03202 ATGGGTACATCAGTGCAGGTAACGCCACTGTGTGGAGTGTACAATGAGAACCCTCTCTCGTATTTGGTCTCCATTGATGGCTTCAACTTCCTCGTCGACTGTGGCTGGAACGACCACTTCGACCCTTCCCTCCTCCAACCCCTCTCCAGGGTAGCATCAACCATTGATGCCGTCTTGCTTTCACATGCTGATACACTTCACCTTGGTGCCCTTCCTTATGCTATGAAGCAGCTTGGACTCTCTGCCCCTGTTTATTCAACTGAGCCTGTCTACAGATTGGGCCTTCTCACTATGTATGATCAGTACCTCTCAAGAAAGCAAGTGTCGGAGTTTGATCTGTTCACGCTGGATGATATTGATTCTGCTTTCCAGAGTGTAACGAGGCTAACCTATTCTCAGAATCATCATCTCTCAGGCAAGGGAGAAGGAATTGTGATTGCACCTCATGTTGCTGGACACCTTTTGGGCGGTACTGTTTGGAAAATTACAAAGGATGGTGAGGATGTCATATATGCTGTTGATTTTAATCATAGGAAAGAAAGGCATTTGAATGGAACTGCTCTAGGTTCTTTTGTGCGGCCAGCTGTTCTAATAACTGATGCTTACAATGCTTTAAACAATCAGCCTTACAGACGTCAAAAAGACAAAGAATTTGGAGATATCTTAAAGAAGACTCTAAGGGCAGGTGGCAATGTATTACTACCTGTTGACACTGCTGGACGAGTGTTGGAACTTATTCTGATGTTGGAATCGTACTGGGCCGATGAAAACTTGAACTACCCTATATACTTTCTTACATATGTTGCATCCAGCACAATTGATTATGTGAAGAGTTTCCTTGAGTGGATGAGTGATTCCATAGCAAAGTCTTTCGAAAAAACTCGTGAAAATATATTTCTTTTAAAGTTTGTCACCCTTCTGATTAACAAGACTGAGCTTGAGAATGCTCCAGAGGGTCCAAAGGTTGTTCTAGCATCCATGGCAAGTTTAGAAGCAGGTTTTTCTCATGATATATTTGTTGAGTGGGCCAATGATTCAAAAAATCTTGTGCTTTTTACTGAAAGAGGCCAGTTTGCAACACTAGCTCGTATGCTCCAAGCTGATCCTCCTCCAAAAGCTGTCAAAGTTGTTGTGTCCAAGCGTGTTCCTTTAGTTGGGGAAGAGCTCATTGCTTATGAAGAAGAGCAAAATCGAATAAAAAAAGAAGCTTTAAAAGCTAGTCTTTTGAAAGAGGAAGAATTGAAAACATCTCATGGGTCTGATAATAATACTAATGATCCAATGGTCATCGATTCTGGCAATAATCATGCACCGCCAGAAGTGCCTGGTCCTCGGGGTGGAGGATACCGGGATATATTTATTGATGGATTTGTTCCCCCTTCCACGAGTGTTGCTCCAATGTTTCCCTGTTATGAGAATACATCAGAGTGGGATGATTTTGGTGAGGTCATAAATCCAGATGATTATGTAATTAAGGATGAAGACATGGATCAGACAGCAATGCATGGAGGTGGTGATATGAATGGAAAACTTGATGAAGGTGCTGCAAGTTTGATACTTGATACAAAGCCATCAAAAGTCGTAGCTGATGAAAGGACTGTGCAAGTTAAGTGTTCGTTGGTTTACATGGATTTTGAAGGACGTTCAGATGGAAGATCCATTAAAAATATTCTATCTCATGTGGCTCCCTTGAAGCTGGTTTTGGTGCATGGATCAGCTGAAGCTACAGAGCATCTGAAGCAGCACTGCCTAAAGCATGTTTGTCCTCACGTTTATGCTCCCCAAATTGATGAGACAATTGATGTTACCTCTGATTTATGTGCTTACAAGGTTCAACTATCTGAGAAGCTAATGAGTAATGTACTCTTCAAAAAGTTGGGAGATTATGAAATAGCTTGGGTTGATGCGGTAGTAGGGAAAACAGAAAATGACACGCTCTCTCTGCTCCCTGTTTCTGGAGCAGCTCCTCCACATAAATCTGTTCTTGTTGGTGATTTGAAATTGGCAGATATCAAACAGTTTCTCTCCAGCAAGGGTGTTCAGGTGGAATTTGCTGGTGGAGCTTTACGTTGTGGTGAATATGTAACTCTTCGGAAAGTTGGGGATGCAACTCAAAAGGCAAGTGACCTAAGAGATCGGATTGTTGTAAACAAGAATTCACGGTCAGAAACGTAG 2175 0.4221 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLVDCGWNDHFDPSLLQPLSRVASTIDAVLLSHADTLHLGALPYAMKQLGLSAPVYSTEPVYRLGLLTMYDQYLSRKQVSEFDLFTLDDIDSAFQSVTRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTVWKITKDGEDVIYAVDFNHRKERHLNGTALGSFVRPAVLITDAYNALNNQPYRRQKDKEFGDILKKTLRAGGNVLLPVDTAGRVLELILMLESYWADENLNYPIYFLTYVASSTIDYVKSFLEWMSDSIAKSFEKTRENIFLLKFVTLLINKTELENAPEGPKVVLASMASLEAGFSHDIFVEWANDSKNLVLFTERGQFATLARMLQADPPPKAVKVVVSKRVPLVGEELIAYEEEQNRIKKEALKASLLKEEELKTSHGSDNNTNDPMVIDSGNNHAPPEVPGPRGGGYRDIFIDGFVPPSTSVAPMFPCYENTSEWDDFGEVINPDDYVIKDEDMDQTAMHGGGDMNGKLDEGAASLILDTKPSKVVADERTVQVKCSLVYMDFEGRSDGRSIKNILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYAPQIDETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAVVGKTENDTLSLLPVSGAAPPHKSVLVGDLKLADIKQFLSSKGVQVEFAGGALRCGEYVTLRKVGDATQKASDLRDRIVVNKNSRSET 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03202 724 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2 1 705 IPR027075 GO:0005847|GO:0006378|GO:0006379
Spst4g03202 724 Pfam Metallo-beta-lactamase superfamily domain 22 189 IPR001279 -
Spst4g03202 724 SUPERFAMILY Metallo-hydrolase/oxidoreductase 5 602 IPR036866 -
Spst4g03202 724 CDD CPSF2-like_MBL-fold 8 203 IPR035639 -
Spst4g03202 724 Pfam Cleavage and polyadenylation factor 2 C-terminal 643 702 IPR025069 -
Spst4g03202 724 SMART Lactamase_B_5a 17 230 IPR001279 -
Spst4g03202 724 FunFam Cleavage and polyadenylation specificity factor subunit 2 6 255 - -
Spst4g03202 724 SMART Beta_Casp_2 242 365 IPR022712 -
Spst4g03202 724 MobiDBLite consensus disorder prediction 412 444 - -
Spst4g03202 724 Pfam Beta-Casp domain 242 365 IPR022712 -
Spst4g03202 724 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 533 584 IPR011108 -
Spst4g03202 724 Coils Coil 392 412 - -
Spst4g03202 724 Gene3D - 7 259 IPR036866 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03202 K14402 - gmx:100777002 1337.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03202 4 71691979 71704328 Spst4g03202 4 71691979 71704328 ECH