Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03120 ATGATGAGGATGAGGAATAGTAGTGGTAGTAATAATCACAAGACAAATGGTCTTTCTTCCATCATGAATGGAGGAGGTTCAGCTGCTTGTAGATCTGAGCCTGGTTCAAAGGAATGGGAAATGAGGCCAGGGGGAATGCTGGTCCAGATGAGAACCGCTGACTCGGATCGGAACTCGGTGCTTGTTCCCACAATTAGAGTTAGGGTCAAGTATGGTTCAATTTACCATGAAGTCAACATTAGTTCTCAAGCTACATTTGGGGAGTTGAAGAAGATGTTGTCAGGGCTAACTGGATTACACCATCAAGACCAAAAGCTGTTTTACAAAGACAAGGAGAGGGATTCAAAGGCTTTTCTTGACATGGTTGGGGTCAAGGATAAATCCAAGATAGTTCTAGTGGAAGACCCTATTAGTCAAGAGAAGAGGTTGTTAGAGATAAGGAAGAATGCTAAGATGGAGAAAGCTGCAAAGTCGATCTCAGAAATCAGCTTGGAAGTAGACAGGCTTGCAGGGCGGGTATCAGCCTTTGAGTCAATTATTAGCAAAGGTGGGAAAGTTGTGGAAACAGATGTTCTAAATCTGATTGAGTTATTGATGAACCAATTGCTTAAATTGGATGGCATAATGGCTGATGGGGATGTGAAATTACAGAGGAAAATGCAGGTAAAAAGAGTTCAAAAGTATGTTGAAACTCTTGACTTGCTGAAGGTTAAGAATTCTGTGCCTAGTAGCAATGGAGACCATGCTCCATTACAGCCTCAACAGAAGCATTCAAATGGGCAAAGGTTGGGAGCAGTTCAAGACCAACAACAAAAGCATTCAAATGGACATAATAGGTTAGCCTTAGCACCAATTCAGGAGCAGCAACAAGAACAACCAAGGAACTCAAATGAGAATTCTCTAGCACTTTATCAAGAGCAACAACACCAAACCTCAAGGAATTCCACCTCAGAAGTTGTGGTTACCACAAATTGGGAGTTGTTTGATTCTGCTCCACCATTAATCCCTGTGCAATCCACATCCCCACCCCAACCCCCCCCAGTGACTAATAATTCAGGTCCTCCCAAGTTTAATTGGGAATTCTTCAACTGA 1092 0.4258 MMRMRNSSGSNNHKTNGLSSIMNGGGSAACRSEPGSKEWEMRPGGMLVQMRTADSDRNSVLVPTIRVRVKYGSIYHEVNISSQATFGELKKMLSGLTGLHHQDQKLFYKDKERDSKAFLDMVGVKDKSKIVLVEDPISQEKRLLEIRKNAKMEKAAKSISEISLEVDRLAGRVSAFESIISKGGKVVETDVLNLIELLMNQLLKLDGIMADGDVKLQRKMQVKRVQKYVETLDLLKVKNSVPSSNGDHAPLQPQQKHSNGQRLGAVQDQQQKHSNGHNRLALAPIQEQQQEQPRNSNENSLALYQEQQHQTSRNSTSEVVVTTNWELFDSAPPLIPVQSTSPPQPPPVTNNSGPPKFNWEFFN 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03120 363 ProSiteProfiles Ubiquitin domain profile. 63 133 IPR000626 GO:0005515
Spst4g03120 363 PANTHER BCL2-ASSOCIATED ATHANOGENE 17 329 IPR039773 GO:0051087
Spst4g03120 363 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
Spst4g03120 363 Pfam Ubiquitin family 75 133 IPR000626 GO:0005515
Spst4g03120 363 MobiDBLite consensus disorder prediction 239 276 - -
Spst4g03120 363 SUPERFAMILY Ubiquitin-like 54 139 IPR029071 -
Spst4g03120 363 MobiDBLite consensus disorder prediction 332 363 - -
Spst4g03120 363 Gene3D BAG domain 135 240 IPR036533 GO:0051087
Spst4g03120 363 MobiDBLite consensus disorder prediction 336 352 - -
Spst4g03120 363 Gene3D - 64 134 - -
Spst4g03120 363 MobiDBLite consensus disorder prediction 1 26 - -
Spst4g03120 363 ProSiteProfiles BAG domain profile. 158 236 IPR003103 GO:0051087
Spst4g03120 363 FunFam BAG family molecular chaperone regulator 1 63 134 - -
Spst4g03120 363 CDD Ubl_AtBAG1_like 64 133 - -
Spst4g03120 363 Pfam BAG domain 159 234 IPR003103 GO:0051087
Spst4g03120 363 SMART BAG_1 158 236 IPR003103 GO:0051087
Spst4g03120 363 SUPERFAMILY BAG domain 118 240 IPR036533 GO:0051087
Spst4g03120 363 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03120 Spst-Chr4 70607226 70608901 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03120 - - vun:114181975 642.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03120 4 70607226 70608901 Spst4g03120 4 70607226 70608901 ECH