Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03116 ATGATCCTCACTGGCCTTCTCCTATACTGCCGCTCCATGATCTCCATGCTCTTCCTTGGCCACCTTGGAGAGCTTGCTTTGGCTGGTGGCTCACTAGCGGTTGGCTTTGCCAACATCACTGGCTACTCAATCCTCTCTGGTCTTGCTGTAGGAATGGAACCAATCTGTGGCCAAGCTTTCGGTGCCAAGAGGTTCAAGCTCCTTGGACTTTGCTTGCAAAGAACCATTCTCCTTCTCCTCTTCACTTCCCTCCCCATATCACTCCTTTGGCTCCACATGAAGAAAATTCTTCTCCTTTGTGGCCAAGATGAGGCCATAGCCACACAGGCCCAATCATATCTTGTTTACTCCATTCCTGACCTCATAGCACAATCATTCTTACATCCTTTGAGAATTTACCTTAGGACCCAATCCATTACTCTCCCTCTCACCCTTTGTGCCTCCTTGTCAATTCTCCTTCACATACCCATCAACTACTTCCTTGTGGCTCACCTCAAGCTGGGAATCAAAGGGGTGGCTCTTGGTGGGGTGTGGACAAACTTCAACCTTGTGGCTTCTTTGATTCTTTATATAGTCTTCTCTGGCACTCATAAGAAAACATGGGGTGGTTTCTCTTTTGAGTGCTTCACACAGTGGAAGTCTCTTCTCAATTTGGCCATTCCAAGCTGTGTTTCAGTGTGCTTGGAGTGGTGGTGGTATGAGATCATGATTTTGTTATGTGGGCTGTTGGTGAACCCCAGGGCAACTGTGGCTTCAATGGGGCTTCTGATCCAAACCACTTCTTTGCTTTACATTTTCCCTTCTTCATTGAGCTTCAGTGTGTCAACAAGAGTTGGCAACAAGCTTGGGGCACAGAAGCCTGCAAAGGCAAGGCTTTCTGCCATTGTGGGGTTGTCTTGCAGTTTCATGTCAGGTGTCCTGGCATTGGTTTTTGCTCTCATGGTCAGGAACACATGGGCTACCATGTTCACAAAGGACAAAGAGATTATAAGTTTGACATCTATGGTGTTACCCATAATCGGCCTTTGTGAGCTTGGGAATTGCCCTCAAACAACAGGGTGTGGGGTGCTGAGAGGCACAGCAAGGCCTAAAGTTGGGGCTAACATCAACTTGGGATGTTTCTACCTTGTGGGAATGCCTGTGTCGATTTGGCTAGCTTTCTTCACTGGCTATGATTTTCAAGGTCTCTGGCTTGGCCTTCTTGCAGCTCAAGGGTCTTGTGCAGTGACCATGTTGGTGGTTCTGTGCAGAACTGATTGGGAATTTGAGGCCCAAAGAGCCAAGAAACTCACAGGAATGGGAGGAGCTTCTAGTGTTGACGATCACAACCATGAGGTTGATCCAGAGAAGCCACTCAAACTTGAAAACAAGGAAGATTCTTTGGCATTATTAGCCGACTCTGATGAAAATGAACAGTGA 1419 0.4736 MILTGLLLYCRSMISMLFLGHLGELALAGGSLAVGFANITGYSILSGLAVGMEPICGQAFGAKRFKLLGLCLQRTILLLLFTSLPISLLWLHMKKILLLCGQDEAIATQAQSYLVYSIPDLIAQSFLHPLRIYLRTQSITLPLTLCASLSILLHIPINYFLVAHLKLGIKGVALGGVWTNFNLVASLILYIVFSGTHKKTWGGFSFECFTQWKSLLNLAIPSCVSVCLEWWWYEIMILLCGLLVNPRATVASMGLLIQTTSLLYIFPSSLSFSVSTRVGNKLGAQKPAKARLSAIVGLSCSFMSGVLALVFALMVRNTWATMFTKDKEIISLTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKVGANINLGCFYLVGMPVSIWLAFFTGYDFQGLWLGLLAAQGSCAVTMLVVLCRTDWEFEAQRAKKLTGMGGASSVDDHNHEVDPEKPLKLENKEDSLALLADSDENEQ 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03116 472 CDD MATE_eukaryotic 1 426 IPR045069 GO:0042910|GO:1990961
Spst4g03116 472 MobiDBLite consensus disorder prediction 440 464 - -
Spst4g03116 472 MobiDBLite consensus disorder prediction 433 472 - -
Spst4g03116 472 NCBIfam MATE family efflux transporter 2 397 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Spst4g03116 472 Pfam MatE 1 160 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Spst4g03116 472 Pfam MatE 221 383 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Spst4g03116 472 PANTHER MULTIDRUG RESISTANCE PROTEIN 1 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03116 Spst-Chr4 70580638 70582056 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03116 K03327 - gmx:100787316 829.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03116 4 70580638 70582056 Spst4g03116 4 70580638 70582056 ECH