Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03062 ATGACCCAGACCCGAAAGCCCACCAAGCCCAGCCCCAAGCCCCGACAGGCTCAAAACCCTTCCTTCTCCACCACCGGCATGAAACTCATCGTCCCTCTCCAGGGCGTCGTCCAGGGCCGCGGAGGTCTTCTCCTCGGAACCCTCGTCCCCTGCGCCCTCTTCTACTTCTTCCAGCTCTACCTCAAACGACGCCGTTCCAACTTCTCTCCTCCCTCCCCCTCCTCTGAACCCACCCTCCCCCGAACCTCCTCTCGCTCCAGTTTGTCCACGCGTGGCGCCATTTCCCGGGTTCGTCTCTCCAAGCTCGCCACGCAGATTTCCCGGCCCGAAGACTCCCTCTACTACGTCGGCTTGGAGAGGGTTTCGCGAGATCCCTACCACGCCGTCGAGAATCCCCATGGGATTATTCAGTTGGGGTTGTCGGATAACAAGCTGTGCTTCGATTTGATAGGGGATTGGGTGGCGCGGAACTTGGAGGGGACGATGAGTGGCGGTGTTGGTTTGGGCATCAACGGGATTGCGCCGTATCAGACGTTTGATGGGGTGATGGAATTGAAAATGGCCTTGTCAGATTTTATGCATCACGTGATGGGGGGATCAGTGAAATTTGACCCATCTAATATGGTACTAACAGCTGGAGCAACTCCTGCAATTGAGATATTGTCCTTCTGTTTGGCAGACCATGGGAATGCATTCCTTGTCCCTACACCATATTATCCAGGCTTTGACAGGGATGTAAGATGGCGTCCAGGGGTAGACCTAATACCTGTTCACTGTCGTAGTACTGACAATTTCAACCTTAATATCACTGCTTTAGAACAAGCATTTAGTCAAGCAAGAAAACGAGGAGACAAAGTTCGTGGAATTCTAATTTCCAATCCTTCAAATCCCGCTGGCAATATTATGACACAAGACATGCTTTACAGTCTTCTGGACTTTGCTGAAGAAAAAAACCTTCATATCATTGCCGATGAAGTATTTGCAGGCTCCACATTTGGAAGTGAGAAGTTTGTGAGCCTAGCCGAAATTCTTGATTCAGATATAGACAAGAGTCGGTTTCATATAGTATATGGCCTGTCAAAAGACCTCTCTCTTGCCGGCTTTAGAGTTGGGGTTATATGTTCATTCAATGAGAGTGTTTTGGCTGCTGCCAAGAAGTTGACTAGATTTTCCTCTATATCTGCTCCAACGCAGAGGTTAGTTACTTCAATGCTTTCAGATAAAAGATTTATTCGGGAGTATTTAGAAACCAACCGGAAAAGAATACGACAAGTGCATGATGAATTTGTGGATTGTTTAAGTAAACTAGGAATCGAGTGTGCCAAGAGCAGTGCTGGTATGTTCTGTTGGGCTAATATGAGTGGATTAATCCGACCCTATAGTGAAAAAGGGGAAATTGAGTTGTGGGAGAAGTTTTTAAGTATTGCTAAGATCAATATAACTCCTGGATCAGCCTGCCATTGCATAGAACCAGGATGGTTTCGAATTTGTTTTACTAATATAGAATTAGAGGAGATTCCTCTGGTTATTGAACGAATTAGGAGAGTTGTTGAAAGTTGTAATTCTTCTAGTTGA 1575 0.4692 MTQTRKPTKPSPKPRQAQNPSFSTTGMKLIVPLQGVVQGRGGLLLGTLVPCALFYFFQLYLKRRRSNFSPPSPSSEPTLPRTSSRSSLSTRGAISRVRLSKLATQISRPEDSLYYVGLERVSRDPYHAVENPHGIIQLGLSDNKLCFDLIGDWVARNLEGTMSGGVGLGINGIAPYQTFDGVMELKMALSDFMHHVMGGSVKFDPSNMVLTAGATPAIEILSFCLADHGNAFLVPTPYYPGFDRDVRWRPGVDLIPVHCRSTDNFNLNITALEQAFSQARKRGDKVRGILISNPSNPAGNIMTQDMLYSLLDFAEEKNLHIIADEVFAGSTFGSEKFVSLAEILDSDIDKSRFHIVYGLSKDLSLAGFRVGVICSFNESVLAAAKKLTRFSSISAPTQRLVTSMLSDKRFIREYLETNRKRIRQVHDEFVDCLSKLGIECAKSSAGMFCWANMSGLIRPYSEKGEIELWEKFLSIAKINITPGSACHCIEPGWFRICFTNIELEEIPLVIERIRRVVESCNSSS 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03062 524 Pfam Aminotransferase class I and II 137 513 IPR004839 GO:0009058|GO:0030170
Spst4g03062 524 CDD AAT_like 176 515 - -
Spst4g03062 524 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 358 371 IPR004838 GO:0003824|GO:0009058|GO:0030170
Spst4g03062 524 Gene3D Aspartate Aminotransferase, domain 1 124 512 IPR015422 GO:0003824
Spst4g03062 524 Gene3D - 158 407 IPR015421 GO:0003824
Spst4g03062 524 MobiDBLite consensus disorder prediction 67 91 - -
Spst4g03062 524 MobiDBLite consensus disorder prediction 1 23 - -
Spst4g03062 524 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 99 518 - -
Spst4g03062 524 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 170 186 - -
Spst4g03062 524 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 384 407 - -
Spst4g03062 524 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 352 376 - -
Spst4g03062 524 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 138 164 - -
Spst4g03062 524 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 207 227 - -
Spst4g03062 524 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 319 342 - -
Spst4g03062 524 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 229 250 - -
Spst4g03062 524 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 283 307 - -
Spst4g03062 524 SUPERFAMILY PLP-dependent transferases 104 518 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03062 Spst-Chr4 69972662 69976409 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03062 K14270 - gmx:100800539 884.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03062 4 69972662 69976409 Spst4g03062 4 69972662 69976409 ECH