Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03059 ATGAGTTTCGCGGCGTACAAGATGATGCAGTGTTCCACCGGCATCGACAACTGCGCAACCGGCTTCCTCACGCATTCACGCGCCGACACCGTCCCGCTCCAGCCCGACGACCTCGACGCGGAGTGGCCCTCTCGCCCCCGCCGCGTCGGCCCCCTCCCCAACCTTGTCGTCACCGCGGCCAACGTCCTCGAAGTCTATGCTGTCCGCCTCCAGCAAGACCAGCCGCCCAAGGCCGCCGACCCCCGTCGTGCTACCCTCCTCGATGGAATCGCCGGAGCCTCCCTGGAGCTCGTGTGCCACTACAGGTTTCGCCTCTGTCCACTTACCTTGGGAGGAGTTAGTCCTCTTGATAATGTGCAAAATCTAGGGATGAAGTTTAGAGGAGGCTGTGAGGATTTACTGGAATTTAGGGCTATATTAGTTATCTGTTTCAGTTCTGGTTCCTATCATAATGGGAATATGGGACATGACCTTGATTCTTTGCTTCTCAATTTGTTACATGGTAATGTTGAAACCATGGCTGTCTTGAGCATTGGAGGTGGTGATGCTTCTAGGAAGAGAGATTCTATAATCTTAACTTTTGCAGATGCCAAGATTTCAGTTCTTGAGTATGATGATTCTATTCATGGACTTCGAACTAGGACTGGAATGTGGAAGATGTACAGGGCTTGCATAAAGCATGCTGTTGCTATTTCTTTTTCAATGTTGTTTAGGGCCAGGGGATTTAGCTTACACCTTGTCTGTTACTTGTTTCTACCTGCTAGTTCTTTGCATTGCTTTGAGGGTCCAGAGTGGCTTCACCTGAAAAGAGGAAGAGAACAATTTGCAAGAGGACCGGTGGTTAAGGTTGATCCTCAAGGCAGGTGTGGTGGAGCTCTTATATATGATTTGCAAATGATAATACTAAAGGCTACTCAGGTTTATCCTCTATGCCTTGTGAATTTGAAATACTTTGTTGCATACTACTTATTTGTTTTGTACCTGGCTGGTTCTGGTTTAGTTGGGGATGATGATGCCTTGGGATATTCAGGAGCAGTTGCTGCACGTATTGAGTCATCTTATATGATAAACCTACGGGACTTGGATATGCGCCATGTAAAAGATTTTACATTTGTTCATGGCTATATTGAACCTGTAATGGTTATTTTACATGAACGAGAGCTCACTTGGGCTGGGCGTGTCTCATGGAAGCATCATACTTGCTCGATATCAGCACTTAGTATCAGCACAACATTGAAGCAGCATCCACTTATTTGGGCAGCTGCTAATCTCCCCCATGATGCATACAAGCTTCTTGCGGTGCCCTCGCCAATAGGTGGTGTTCTTGTAATTGGTGCTAACACTATTCATTATCACAGTCAGATACCAAGATCAAGTTTCAATGTGGAGCTTGATGCTGCCAATGCAACTTGGTTGTTGAATGATGTGGCCTTGCTGTCTACAAAAACTGGCGAACTGTTATTGCTTACACTTGTTTACGATGGAAGGGTTGTACAGAGACTCGATCTTTCGAAGTCAAAAGCTTCAGTTCTATCATCTGGTATTACGACAATTGGAAATTCTTTGTTTTTTCTAGCCAGTCGGTTAGGGGACAGTATGCTGGTGCAATTTTCTTGTGGATCAGGTTCAATGTTGTCATCTAACCTAAAAGAAGAGGTTGGTGATATTGAAGCAGATGCTCCATCAAAGAGATTGCGGAGGTCACCTTCTGATACTTTGCAAGATATGGTTAGTGGTGAGGAGCTCTCCTTGTATGGATCTGCTCCAAATAGAACAGAATCAGCACAGAAATCCTTCTCGTTTGCAGTGAGGGATTCATTGATTAATGTTGGTCCTTTGAAAGATTTTTCATATGGTTTAAGAATAAATGCTGATGCAAATGCTACAGGGATCGCCAAACAGAGTAACTATGAATTGGTGTGCTGTTCTGGTCATGGAAAGAATGGTTCTTTGTGTGTTCTGCGGCAATCAATTCGTCCAGAAGTGATTACTGAGGTTGAACTTCCTGGTTGCAAAGGAATTTGGACTGTGTATCATAAGAGCACACGTGCTCTTAATACTGATTCTTCTAAGCTGACTGACGATGACGATGAGTATCATGCTTATCTTATTATTAGTTTGGAGGCTCGTACAATGGTACTAGAAACAGCTGATCTTCTGAGTGAGGTTACTGAAAGTGTAGACTATTATGTTCAAGGAAAAACACTTGTAGCTGGAAATTTATTTGGAAGGCGTCGAGTTATCCAAGTCTATGAACGAGGTGCTCGAATTCTAGATGGTTCTTTTATGACCCAAGATGTAACCTTTGGACCTTCAAATTCAGAATCTGGTTCTGCATCTGAGACGGCTATAGCTCTTTCTGTTTCTATAGCTGATCCATTTGTCTTACTCAGAATGAGTGATGGAAGTATTCGACTTCTGATTGGAGATCCTATTACCTGCACCATTTCTGTCACTTCTCCAACTTCATTTGAGAGCACCAAGGGATCAGTTTCTTCATGCACACTGTACCATGATAAAGGACCTGAGCCTTGGCTGAGGAAGACTAGTACTGATGCATGGCTTTCTACTGGTGTTGGTGAGGCTATTGATGGCACTGATGGTGCAGCTCAGGACCATGGGGATATTTATTGCGTTGTTTGTTTTGATAATGGTAGCCTTGAAATATTTGATGTGCCCAATTTCAATTGTGTCTTTTCTGTGGAAAATTTTATGTCTGGAAAGAGCCATCTTGTTGATGCTCTGATGAAAGAGGTACCAAAAGATTCTAAAAAAGGGGATAGAGATGGAGTGGTCAGCCAAGGGAGGAAGGAAAATGTACCAGACATGAAGGTAGTAGAGTTGGCCATGCAGAGGTGGTCTGGGCAACATAGCCGTCCATTTCTTTTTGGAATTTTGAGTGATGGAACTATTCTTTGTTACCACGCTTACCTTTATGAAAGTCCAGATGGTACTTCTAAAGTTGAGGATTCAGTATCAGCAGGAGGATCCATTGGCCTTGCTACTACCAGTGTTTCTAGGCTTAGAAATTTGAGATTTGTTCGTGTGGCCTTGGATGCATCTGCCAGGGAGGAGACATCTAATGGATCTTCTCGTCAACAAATTACTATTTTCAAGAATATTGGTAGTTATCAAGGATTCTTCCTATCAGGGTCAAGACCAGCTTGGGTCATGGTGCTGAGGGGACGGCTTCGTGTTCATCCACAGCTATGTGATGGATCTATTGTTGCTTTTACTGTTCTTCACAACGTGAACTGCAATCATGGACTTATATATGTTACATCACAGGGTGTTTTGAAGATATGCCAGTTGCCTTCTGGCTCAAACTATGACAGCTGCTGGCCTGTACAAAAAATTCCACTAAAAGCCACTCCACACCAAGTAACATATTTTGCGGAGAAGAATTTATATCCACTTATCGTCTCATTTCCTGTTCTTAAACCATTAAATCAAGTTATTTCTCTGGTTGACCAAGATGCCAACCATCAGAATGAGAGTCAGAATATGAATTCTGATGATCAAAACCGGTTTTATCCTATTGATGAATTTGAGGTTCGAATTATGGAGCCAGAAAAGTCTGGTGGCCCTTGGCAAACAAAAGCCACAATACCTATGCAAAGTTCTGAAAATGCCCTTACTGTGAGGATGGTCACTCTGCTGAATACAACCTCAAAAGAAAATGAAACACTTTTAGCCATTGGTACTGCTTATGTGCAAGGAGAAGATGTTGCTGCAAGAGGACGTATCCTCCTGTTTTCTTTGGGGAAAAATACTGATAATCCACAATCTCTGGTTTCAGAGGTGTACTCTAAGGAATTAAAAGGTGCTATATCTGCCTTGGCCTCACTTCAGGGCCATCTATTAATAGCCTCTGGTCCAAAAATTATTCTGCACAAGTGGAATGGCACTGAGTTGAATGGTATTGCATTTTTTGATGCACCGCCGTTACATGTTGTGAGCTTAAATATTGTAAAGAATTTCATCCTTATTGGCGACATCCATAAAAGCATATACTTTCTTAGTTGGAAAGAGCAGGGTGCTCAGTTGAGCTTATTAGCCAAAGATTTTGCTTCTCTTGATTGTTTTGCGACGGAATTTTTGATTGATGGAAGTACTCTCAGTCTCATGGTTTCAGATGATAAAAAAAATATCCAGATTTTTTATTATGCACCAAAGATGTCTGAGAGTTGGAAAGGACAGAAGCTTCTTTCAAGAGCTGAATTTCATGTTGGTGCCCATGTGACTAAATTCTTAAGGTTGCAAATGCTATCCACTTCGGATAGAGCTGGTTCAGCTCCAGGCTCAGATAAAACCAATCGTTTTGCCTTATTATTTGGAACCTTGGACGGCAGTATTGGTTGCATTGCTCCTCTTGATGAAATCACATTTCGCAGACTGCAGTCTTTGCAGAAAAAGCTTGTTGATGCTGTACCCCATGTTGCTGGCCTAAACCCCAGAGCTTTCAGACAATTTCGGTCAAATGGAAAAGCTCATCGGCCGGGCCCAGACAGTATAGTTGACTGTGACCTGCTTTGCCATTATGAAATGCTTCCTTTGGAGGAACAGCTTGAAATTGCTCACCAGGTCTTATTATCAGAATTAAATGCATGTGTCGAAAGCTTGGTTAAGTTATTAGATCATAGCCTAACTCTTACTGCACTTGGAAACAGTGAAAGCAGACAGTTGTTGGATAGGATGTCCATAATTGATCCCAATGGATGTCTCATACTCTGGAGTCTGTTTGATGCCCTCCTAATGGACGACGTGGATGTAACATGA 4779 0.4285 MSFAAYKMMQCSTGIDNCATGFLTHSRADTVPLQPDDLDAEWPSRPRRVGPLPNLVVTAANVLEVYAVRLQQDQPPKAADPRRATLLDGIAGASLELVCHYRFRLCPLTLGGVSPLDNVQNLGMKFRGGCEDLLEFRAILVICFSSGSYHNGNMGHDLDSLLLNLLHGNVETMAVLSIGGGDASRKRDSIILTFADAKISVLEYDDSIHGLRTRTGMWKMYRACIKHAVAISFSMLFRARGFSLHLVCYLFLPASSLHCFEGPEWLHLKRGREQFARGPVVKVDPQGRCGGALIYDLQMIILKATQVYPLCLVNLKYFVAYYLFVLYLAGSGLVGDDDALGYSGAVAARIESSYMINLRDLDMRHVKDFTFVHGYIEPVMVILHERELTWAGRVSWKHHTCSISALSISTTLKQHPLIWAAANLPHDAYKLLAVPSPIGGVLVIGANTIHYHSQIPRSSFNVELDAANATWLLNDVALLSTKTGELLLLTLVYDGRVVQRLDLSKSKASVLSSGITTIGNSLFFLASRLGDSMLVQFSCGSGSMLSSNLKEEVGDIEADAPSKRLRRSPSDTLQDMVSGEELSLYGSAPNRTESAQKSFSFAVRDSLINVGPLKDFSYGLRINADANATGIAKQSNYELVCCSGHGKNGSLCVLRQSIRPEVITEVELPGCKGIWTVYHKSTRALNTDSSKLTDDDDEYHAYLIISLEARTMVLETADLLSEVTESVDYYVQGKTLVAGNLFGRRRVIQVYERGARILDGSFMTQDVTFGPSNSESGSASETAIALSVSIADPFVLLRMSDGSIRLLIGDPITCTISVTSPTSFESTKGSVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGTDGAAQDHGDIYCVVCFDNGSLEIFDVPNFNCVFSVENFMSGKSHLVDALMKEVPKDSKKGDRDGVVSQGRKENVPDMKVVELAMQRWSGQHSRPFLFGILSDGTILCYHAYLYESPDGTSKVEDSVSAGGSIGLATTSVSRLRNLRFVRVALDASAREETSNGSSRQQITIFKNIGSYQGFFLSGSRPAWVMVLRGRLRVHPQLCDGSIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSGSNYDSCWPVQKIPLKATPHQVTYFAEKNLYPLIVSFPVLKPLNQVISLVDQDANHQNESQNMNSDDQNRFYPIDEFEVRIMEPEKSGGPWQTKATIPMQSSENALTVRMVTLLNTTSKENETLLAIGTAYVQGEDVAARGRILLFSLGKNTDNPQSLVSEVYSKELKGAISALASLQGHLLIASGPKIILHKWNGTELNGIAFFDAPPLHVVSLNIVKNFILIGDIHKSIYFLSWKEQGAQLSLLAKDFASLDCFATEFLIDGSTLSLMVSDDKKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSDRAGSAPGSDKTNRFALLFGTLDGSIGCIAPLDEITFRRLQSLQKKLVDAVPHVAGLNPRAFRQFRSNGKAHRPGPDSIVDCDLLCHYEMLPLEEQLEIAHQVLLSELNACVESLVKLLDHSLTLTALGNSESRQLLDRMSIIDPNGCLILWSLFDALLMDDVDVT 1592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03059 1592 FunFam cleavage and polyadenylation specificity factor subunit 1 1072 1457 - -
Spst4g03059 1592 PANTHER DNA REPAIR/RNA PROCESSING CPSF FAMILY 10 1529 - -
Spst4g03059 1592 Gene3D - 1072 1457 IPR015943 GO:0005515
Spst4g03059 1592 Pfam Mono-functional DNA-alkylating methyl methanesulfonate N-term 365 799 IPR018846 -
Spst4g03059 1592 Gene3D - 51 547 IPR015943 GO:0005515
Spst4g03059 1592 Pfam CPSF A subunit region 1183 1515 IPR004871 GO:0003676|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03059 Spst-Chr4 69934313 69953073 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03059 K14401 - gmx:100785543 2420.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03059 4 69934313 69953073 Spst4g03059 4 69934313 69953073 ECH