Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02531 ATGAATAGACAGATTCATGGCGGCAACCCAACCACCGCAGAAGAGATACCAGCCGAACAAGATAACATGAAGGAGCAGTCTTCTCAGAGTACAGCGACTATAGGTCATTCGAGGGAGACCACAAGTCAATCAGGATCTTTAGGTTTCGGCAGTGATGGTCCTCTGTATCCTCCTAATGTGTATGCTCCCCAAGCTCAGGCTTTCTACTACAGAGGTTTTGACAATGGCAATGGTGAATGGGATGAATATTCTTCGTATGTCAATTCTGAGGGATTAGAAATTGGATCTCCTGGTGTCTACAATGAAAATCCATCTCTTATTTTCCATTCTGGATATGGCTTCAACCCACAAATGCCTTATGGACCATATTCCCCAGTTACCACACCTTTGCCTTCTGTAGGTGGAGACACACAGTTATACTCCTCGCAGCAATTTCCATACACTGGACCACCTTATTATCCTCAGCTGATTCCTCCTAGTTTATCATATCTTAATTCACCTACTCCAGTTTCACAGCCAGAGCTCACCAACCTGGTAGGTATTGACCAACAAGTTGATAACATGTTTTTTGGACCAAGAGCAGGCTATCCATCAGTGGGATCTTTTGGTAGAGGCAGCTTTCCTGTAGCACCTGGTTCGTTTGGCTTTCATGAATCCCAACAAGGATTTGAGGGATCAAGATCCGGTGGAATCTGGTCAGATTGCTCAAAACCCTCTGAAAGACAGAGATCTTTGATGCCTCTATCTCCATCTGTTTCTCCACAGCCAATGAGCTCACTTGGGTCATTTGGGCCGAGTGTTGGAATGGCTTCTCATCAACAGCAACCATTGTATGGGTTTGGATCTGGTTCAAACTCTTATGGTAGAGGCTTCCTGCCTAACCAGGGCTCTAGCTTTGGAGGCACTTCTATTTCCAATCTTAATGATAGAAGTTGTGCTTCTCTTGAAAATAGCAGGAGGCAAGGGCGGCCATCTGCATCCCTTTGCAATTGTAATGGTACTCTTGATATCCTTAGTGAGCAGAACCGAGGACCGAGGGCCTCAAAGCTGAAAAATCAAATTTTGGCTGAAAAAAATTCTGTGGATAATAGTAAAAATAGTGCATCTACTGCCAAGTTCCAAAATGAATCACTCAATCGGTCAGATTTTGCCATAGATTACAAGGATGCCAAATTTTTTGTCATCAAATCTTACAGTGAAGATAATGTTCACAAGAGCATTAAATATGGTGTCTGGGCTAGTACACCAAATGGAAACAGGAAGTTGGATGCTGCATATCGCCAAGCAATGGAGAAGCAAGATGCCTGCCCTATATTTCTCTTTTTCTCGGTAAATGCTAGTGCTCAGTTCTGTGGAGTAGCTGAAATGGTTGGACCTGTCAATTTTGACAAGAGTGTCGACTTCTGGCAGCAAGATAAGTGGAGTGGGCAGTTTCCGGTGAAGTGGCAGATAATTAAAGACGTTCCAAACAGTCAATTTCGTCACATTGTTCTTGAAAATAATGATAACAAGCCTGTGACTAACAGTCGAGATACCCAGGAGGTGAAGTTGCCTCAGGGGATTGAAATGTTGACCATTTTTAAAAACTATGAAACTGATGTTTCCATCCTTGATGATTTTGATTTTTATGAAGACCGGCAGAAGGCTATGCAAGAAAGGAAGGCACGGCAGCAAAGCAGCATGATGGCTACTGGGTTAGTGGGAGAAAATGAGCATAGGAGTTCTGCAAACACTACTGGTGATTTAATGAAGCAGATGTCAAAGAGCTTTGCAATAGTTGTCCGCTTAGACGAGAATAACAACGAAGTTGCTCCGGACAGAGATAGTTTAGTCTCTCATGGCCCCATTGGTAATGTAGTTAAATGTGATGATGGTCAATCAGTGACGTCTTCTTCAACTCAAACCAATTAG 1911 0.4317 MNRQIHGGNPTTAEEIPAEQDNMKEQSSQSTATIGHSRETTSQSGSLGFGSDGPLYPPNVYAPQAQAFYYRGFDNGNGEWDEYSSYVNSEGLEIGSPGVYNENPSLIFHSGYGFNPQMPYGPYSPVTTPLPSVGGDTQLYSSQQFPYTGPPYYPQLIPPSLSYLNSPTPVSQPELTNLVGIDQQVDNMFFGPRAGYPSVGSFGRGSFPVAPGSFGFHESQQGFEGSRSGGIWSDCSKPSERQRSLMPLSPSVSPQPMSSLGSFGPSVGMASHQQQPLYGFGSGSNSYGRGFLPNQGSSFGGTSISNLNDRSCASLENSRRQGRPSASLCNCNGTLDILSEQNRGPRASKLKNQILAEKNSVDNSKNSASTAKFQNESLNRSDFAIDYKDAKFFVIKSYSEDNVHKSIKYGVWASTPNGNRKLDAAYRQAMEKQDACPIFLFFSVNASAQFCGVAEMVGPVNFDKSVDFWQQDKWSGQFPVKWQIIKDVPNSQFRHIVLENNDNKPVTNSRDTQEVKLPQGIEMLTIFKNYETDVSILDDFDFYEDRQKAMQERKARQQSSMMATGLVGENEHRSSANTTGDLMKQMSKSFAIVVRLDENNNEVAPDRDSLVSHGPIGNVVKCDDGQSVTSSSTQTN 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02531 636 CDD YTH 391 527 IPR007275 GO:0003723
Spst4g02531 636 ProSiteProfiles YTH domain profile. 390 527 IPR007275 GO:0003723
Spst4g02531 636 MobiDBLite consensus disorder prediction 604 636 - -
Spst4g02531 636 MobiDBLite consensus disorder prediction 22 49 - -
Spst4g02531 636 FunFam YTH domain family 1, isoform CRA_a 369 542 - -
Spst4g02531 636 Pfam YT521-B-like domain 390 528 IPR007275 GO:0003723
Spst4g02531 636 MobiDBLite consensus disorder prediction 219 268 - -
Spst4g02531 636 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 79 606 IPR045168 -
Spst4g02531 636 MobiDBLite consensus disorder prediction 218 268 - -
Spst4g02531 636 Gene3D ph1033 like domains 366 542 - -
Spst4g02531 636 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02531 Spst-Chr4 65389422 65398215 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02531 K20102 - gmx:100779278 1188.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02531 4 65389422 65398215 Spst4g02531 4 65389422 65398215 ECH