Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02461 ATGCCCGAGAAAGATTTTCCTGAAGAATGTTGGGAATCAGTCTTCAGATTCCTTGGCCTTGGTCAGCATTTGGAGTCTCTATCTATGGTTTGCAAGCAGTTCCTTTCCATCACAAACAGGCTTCAATTCTCTCTCACAATATATGATCCAACCATTCCACTCCTTCCTCGTCTGTTCCTGAGGTTTCCAATGCTCAAAATCATAGACCTTAGTCGCTTGAATGGCTACCATGAAGGCTTGCTTCATCAAATTTCACAATCCGGGTTGGATCTTCATTTGCTTAATCTATCCAACCAGAGAACAATTCCTATTGATGGCTTGCGAGAACTTGGCTCAAACATGAAACATTTGAGGGTTTTGATCTGCTCAAACATTGGCTCTCTTCGTGATAGCCATCTGGTAATCATAGCCTATTGTTTCCCATTTCTTGAAGAGCTTGACATAAGCTTCCCATTGGATTCTCAAGCATCTGATTTCGGGGTACTAAGGCTGTCTTCTATGCTTGAGAATCTTCGCAAGATTAATATCTCCGGTAATTACTTGATCACTGATAAATCCTTGTTCTCTCTTTGCCAAAACTGTTTGTCATTGGAAGAGATTTCATTCTTCACTTGTTTCAAGATCACTCAAATAGGCATTGCCTCTGCGATCCGCCTCAGACCCGGTTTGAGTTCCATTTCCTTCAATATTGAAAAGAAAAGAATACATGGAGCTGGTTTAACACTCACCCCCATTGACTTGAATTTGATTGATTCGTTCAAGAGTTTGAAAAGGTTAACTGCTATTGATTTGTCAAATTCTGTTATCTCGGATGAGTTTCTCTTAGCGGTTGCAGAAGGTGGAGGTCTTCTGCTAAAGAAGCTTATCCTCCAAGATTGTTGCAATTGTACATTTTCAGGAATCTCTTATGTGTTATCCAAATGCCAATCTGTTCAATGCTTGGATCTTCGGAAAGTTGATTTTTTAACCGATCAATGTATCAGCAAGTTATCTGTGTTTCTTCTTAGCCTAACTTCTATAAACCTCAGTGGTTGTTGCCAGCTGACCAATTCAACATTTTTCATTCTCGCAAGAAACTGTCCTTTTCTCAGTGAGATCAAAATGGAGAGGACATATCTTGGGGTGGGGGGTGAAGAAGATTCAAGGAATAATTTTGTTGTCAACCTTGAAGTGAAAAAAGTGTATTTGGGTGATAATGTTTTGCTGAGTGATGCAAGTTTGATAAAATTTGTTTGCATTTGCCCTAGTTTGCAGCTTCTTGACTTAACCGGTTGTGATGGTGTTTCTGGTGAAGGTATTGTTGAGGTTTTGAAGAGATGCAGTGAGATAAGGCATTTGAGCCTGGTCAATACAGGAATGAAAGTGTTTGAGATAGACTTTGAAGTTTCCAACCTAGAGGTATTGAACTTGTCAGGGTCAAGAATTGAGGATGAAGCACTCTCAGTAATCTCAAGGAGGTGTAGTGGACTACTACTTCTGGATATCCAGAGTTGCTGGCATGTTACACCAAAGGGTGTAAGGGAAGTAGTAGAAAACTGCAGGACATTGAAAGAGTTGAATCTAAAGAATTGTAAGATGGTGAGTGATGATTTTGTTGCTTGGTTGGAGTTTACAAAACCATCATTGAGAACTATAGTCACACCTTCTGAAGTAGATGATTATTGCTGA 1668 0.3981 MPEKDFPEECWESVFRFLGLGQHLESLSMVCKQFLSITNRLQFSLTIYDPTIPLLPRLFLRFPMLKIIDLSRLNGYHEGLLHQISQSGLDLHLLNLSNQRTIPIDGLRELGSNMKHLRVLICSNIGSLRDSHLVIIAYCFPFLEELDISFPLDSQASDFGVLRLSSMLENLRKINISGNYLITDKSLFSLCQNCLSLEEISFFTCFKITQIGIASAIRLRPGLSSISFNIEKKRIHGAGLTLTPIDLNLIDSFKSLKRLTAIDLSNSVISDEFLLAVAEGGGLLLKKLILQDCCNCTFSGISYVLSKCQSVQCLDLRKVDFLTDQCISKLSVFLLSLTSINLSGCCQLTNSTFFILARNCPFLSEIKMERTYLGVGGEEDSRNNFVVNLEVKKVYLGDNVLLSDASLIKFVCICPSLQLLDLTGCDGVSGEGIVEVLKRCSEIRHLSLVNTGMKVFEIDFEVSNLEVLNLSGSRIEDEALSVISRRCSGLLLLDIQSCWHVTPKGVREVVENCRTLKELNLKNCKMVSDDFVAWLEFTKPSLRTIVTPSEVDDYC 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02461 555 SUPERFAMILY RNI-like 295 545 - -
Spst4g02461 555 Gene3D Ribonuclease Inhibitor 453 547 IPR032675 -
Spst4g02461 555 Gene3D Ribonuclease Inhibitor 379 452 IPR032675 -
Spst4g02461 555 Gene3D Ribonuclease Inhibitor 230 373 IPR032675 -
Spst4g02461 555 FunFam F-box/LRR-repeat protein 4 138 233 - -
Spst4g02461 555 FunFam F-box/LRR-repeat protein 20 460 547 - -
Spst4g02461 555 PANTHER UNCHARACTERIZED 253 531 - -
Spst4g02461 555 Gene3D Ribonuclease Inhibitor 138 229 IPR032675 -
Spst4g02461 555 FunFam F-box/LRR-repeat protein 4 239 374 - -
Spst4g02461 555 Pfam Leucine Rich repeat 464 483 IPR001611 GO:0005515
Spst4g02461 555 Pfam Leucine Rich repeat 512 529 IPR001611 GO:0005515
Spst4g02461 555 Pfam Leucine Rich repeat 414 434 IPR001611 GO:0005515
Spst4g02461 555 SUPERFAMILY RNI-like 51 293 - -
Spst4g02461 555 Gene3D - 4 39 - -
Spst4g02461 555 SMART LRR_CC_2 334 359 IPR006553 -
Spst4g02461 555 SMART LRR_CC_2 513 540 IPR006553 -
Spst4g02461 555 SMART LRR_CC_2 256 280 IPR006553 -
Spst4g02461 555 SMART LRR_CC_2 462 486 IPR006553 -
Spst4g02461 555 SMART LRR_CC_2 487 512 IPR006553 -
Spst4g02461 555 SMART LRR_CC_2 88 113 IPR006553 -
Spst4g02461 555 SMART LRR_CC_2 194 219 IPR006553 -
Spst4g02461 555 SMART LRR_CC_2 168 193 IPR006553 -
Spst4g02461 555 SMART LRR_CC_2 414 439 IPR006553 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02461 Spst-Chr4 64916985 64918652 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02461 K10268 - gmx:100811565 927.546