Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02395 ATGATGGGATCCGGGTCGGGTTCTCTGGTGTGGTTCCGGAAGGGTATTCGGATCCACGACAACCCGGCTCTCGAGTTCGCATCCCGAGGCGCCTCTCATCTCTACCCTGTCTTTGTCATCGACCCGCATTACATGAAACCCGACCCGAATTCTCCCTCACCCGGGTCATCACGCGCGGGTCTGAACCGCATAAAGTTCTTGCTGGAGAGTCTGGTGGACCTTGATCTCAACCTCAAGAACCTTGGCTCGCGACTTTTGATTCTCAAGGGTGACCCAGCTGAAGTCGTCATCCAATGTTTGAAGGAGTGGAATATCAACAAGCTATGCTTTGAATACGACACCGAACCGTATTATCAGGCTCTGGATGTTAAAGTAAAGAACTTTGCACTTGCTGCTGGAATTGAGGTTTTCTCTCCGGTGAGTCACACGCTCTTCAACCCCAACGATATTATACACAAGAACGGAGGGAAACCGCCCCTTAGTTATAATTCTTTTGTCAAACTTGCTGGGGAACCGCCATCTCCTCTCTCAACCGTGTACTCCTCACTTCCTCCGGTTGGCCATCTTGGAAGTTGTGATATTTCTGAAGTTCCTACCATCACAGATCTTGGATATGGAGATGCCGAACAAGATGAGTTCTCTCCTTTCAAAGGTGGTGAGTCAGAAGCGTTGAGGAGGTTGGATGAATGTATGAAAGACAAGAAGTGGGTGGCAAACTTTGAGAAACCCAAGGGCAATCCATCTGCATTTCTTAAGCCAGCAACAACTGTTTTATCACCATACCTGAAATTTGGTTGTCTCTCTTCCAGATATTTCTACCAGCGAATTCAGGATATATATAGAAGCATGGCAAAGCATACATCACCGCCTGTTTCTCTTACAGGACAGTTGTTGTGGCGAGACTTTTTTTACACAGCTGCTTTTGGGACTCCAAATTTTGATAGAATGAAAGGCAATAGGATATGCAAACAGATTCCTTGGAAGGATGATGATAAACTGCTGGAGGCTTGGAGGGAGGCTAGGACAGGATTTCCTTGGATTGATGCTATCATGATACAGCTACGCAAATGGGGTTGGATGCATCATTTGGCACGGCATTCTGTTGCATGTTTTCTTACTCGTGGCGATCTGTTTGTTCATTGGGAAAAAGGACGGGATGTCTTTGAGAGGCTTCTGATTGATTCAGATTGGGCCATTAATAACGGAAACTGGATGTGGCTTTCTTGTTCATCTTTCTTTTATCAGTACAATCGTATTTATTCCCCAACCACGTTTGGTAAGAAGTATGACCCTAATGGCTACTATATTAGGCATTTTCTCCCGGTTTTAAAAGATATGCCCAGGGAGTACATTTATGAACCCTGGACGGCTCCTAAAAGCATTCAGACCAAAGCAAATTGCATAATTGGCAAAGACTACCCAATGCCAGTTGTTTCTCATGATTCTGCGAGTAAAGAATGCCGAAGGAAAATGGGGGAGGCATATGCATTGAATAAAGAATTGAATGGTTTGGTTGGTGAAGATGATCTGAAAAAGTTGAGGAAATTAGATGAGAGTGAAAGGCAAGAGCCTGGAACTAAGAGATATAAGCAACAGCTGATTGGCTGA 1608 0.4502 MMGSGSGSLVWFRKGIRIHDNPALEFASRGASHLYPVFVIDPHYMKPDPNSPSPGSSRAGLNRIKFLLESLVDLDLNLKNLGSRLLILKGDPAEVVIQCLKEWNINKLCFEYDTEPYYQALDVKVKNFALAAGIEVFSPVSHTLFNPNDIIHKNGGKPPLSYNSFVKLAGEPPSPLSTVYSSLPPVGHLGSCDISEVPTITDLGYGDAEQDEFSPFKGGESEALRRLDECMKDKKWVANFEKPKGNPSAFLKPATTVLSPYLKFGCLSSRYFYQRIQDIYRSMAKHTSPPVSLTGQLLWRDFFYTAAFGTPNFDRMKGNRICKQIPWKDDDKLLEAWREARTGFPWIDAIMIQLRKWGWMHHLARHSVACFLTRGDLFVHWEKGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQYNRIYSPTTFGKKYDPNGYYIRHFLPVLKDMPREYIYEPWTAPKSIQTKANCIIGKDYPMPVVSHDSASKECRRKMGEAYALNKELNGLVGEDDLKKLRKLDESERQEPGTKRYKQQLIG 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02395 535 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 208 497 IPR036134 -
Spst4g02395 535 Gene3D HUPs 4 141 IPR014729 -
Spst4g02395 535 FunFam Cryptochrome-1 311 531 - -
Spst4g02395 535 PANTHER CRYPTOCHROME 8 498 IPR002081 -
Spst4g02395 535 Pfam DNA photolyase 8 168 IPR006050 -
Spst4g02395 535 MobiDBLite consensus disorder prediction 515 535 - -
Spst4g02395 535 Pfam FAD binding domain of DNA photolyase 295 491 IPR005101 -
Spst4g02395 535 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 6 144 IPR006050 -
Spst4g02395 535 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 311 534 - -
Spst4g02395 535 Gene3D - 142 309 - -
Spst4g02395 535 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 188 IPR036155 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02395 Spst-Chr4 64460676 64464953 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02395 K02295 - gmx:100780347 1040.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02395 4 64460676 64464953 Spst4g02395 4 64460676 64464953 ECH