Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02359 ATGGAAGCTGATGAAGGAGCGGCAAAATTCCCAGGGTTTCCTTTCGAACCCTATTCAATTCAGATTGATTTCATGAACAGCTTGTATCAATCTCTCAATCAAGGAGGCGTGTCTATGTTGGAAAGCCCAACTGGGACTGGGAAGACCATGAGTGTAATTTGCAGTGCCTTGCAATGGGTGCTTGACCGGAGGCTGCAACAGGAAGCACTTTGTGATGAGAATCCAGGGAATGGCAGTGGTGGCAGGGTTGGTTTAGATGACGAACCTGATTGGATGAGGGACTTCATCATCAACAAAGTAGAGAATAATAAGAAGGAAGAAAAGCGCGGGTTTGTGTGGGGAAAACCTCATAATAATAAAAATAGTAAGGAAATTCGTAAGGATTTTAGAGTTATGGGGGCTGGAGAGGAAAAGGGGGGTGAGAGTTTGCAAAAGAAAATTGATGCAGTGGATGAGGAGTTTTTACTGGAGGAATACGAGAGTGAAGATGAGAGAGGGCCAGGGAGTGTAGTGTCCAAGAGGAAGGCTGTTAACACCTCCTTTAGTTCCTCTAGTGAAGATGAGTCTAGCGAGGAGGAAGAGGAGGAGGAGAAGAAGTGGAAGGTTTATTTCTGCAGTAGAACTCACTCACAACTTTCGCAGTTCATAAAGGAATTGCGTAGGACGGTGTTCGCTACTGAGATGAAGGTTGTAAGTTTAGGCTCCAGAAAAAATCTTTGCATTAATGAAGAAGTTGTTGAACTTGGAAACTCTACACGTATAAATGAGCGATGCTTGGAACTTCAGAAGAAAAAGAAAACTGATGCCACCAAAGTTAAGAACGTAAAAGTAGGTGCAGGGATACGCAGAACAAAGGCCACTTCTTCTGGTTGCCCAATGCTTAGAAAACACAGAGTTCAACAAGAATTTAGGAATGAGGTATTTCAACAAAGACCCCTGGATATTGAAGATCTTGCTAATCTTGGAAGAACTATGGGAACTTGTCCATACTATGGCTCTAGAAGCATAGTTCGGAGAGCTGATCTTGTTGTCCTACCATATCAATCGCTTCTGTCTAAATCATCTCGTGAAGCACTTGGCCTGAATTTGAAATCCACTATTGTTATAATAGATGAGGCTCATAATTTAGCTGATTCACTCATCAACATGTATGACTCCAAAATTACTTTATCACAGCTGGAGACTGTGCACAGCCATTTGGAACGGTACTTTGTGAGATTCCGGAATCTTTTGGGACCAACTAATCGGAGATACATTCAAACCCTGATGGTCCTCACACAAGCTTTTCTCCGAGTACTACTTGATGATAAAGATGGAAATATTATAGGTTCTTGCTGTGATATAGATCAATCTTCTGAAGAAAATAGAGCCTCTGATTTTACTATGGCCATCAATGATTTTTTATTTGAACATAATATAGACAATATCAACTTGGTCAAATTGTTGAAGTATGTGAAGGAAAGTAATATCATGCACAAGCTTAGTGGTTATGGAGAAAAGTTGGCTACCTTGGAGAAGATACCAGCACACCATAAAATAGAGGAACATGCTGAGGAGGGAAGCTGTGTATCTGCCTTCCAGACCTTAGTTGACATATTACTATCACTGACACACAATGATGGTGATGGAAGGATAATAATTTCCAGGTCTAGGTCAACGAGCATCGGGAAGCAAGGAGGATATATCAAGTATGTTATGCTCAGTGCAGAGAAGATTTTTTCCGAGATTGTAGATGAAGCACATGCCGTTGTATTAGTAGGGGGAACACTTCAACCTATAGAAGAGACTAGGGAGCGACTCTTTCCATGGTTACCATCAAACCAGTTGCATTTCTTTTCATGCGGGCATATTGTTCCTCCTGATAGCATTATGCCAATTGCTCTTACACGTGGGCCTACTGGACGCACCTTTGATTTTAGCTTCAACTCCAGGAACTCACCAGACATGATGCGAGAACTGGGTCTTTTGCTATGTAATTTAGCGACTGTGGTTCCGGAAGGAATTGTGGTCTTCTTCCCTTCTTTTGATTATGAAAACAGAGTCTATAAGTATTGGCAGTCATCTGGCATTCTTGAAAGGATTACAAAGAGGAAGCGTGTATTTAGGGAGCCTAGAAATAACATGGACGTTGAATCCGTTCTTAAGGAATATAAAGATAACATTTATACATCGTCGGGTATGAATTCAGAAATAAACCAGGCATCTTATAGTGGTGGTGCAATACTCCTTGCTGTTGTTGGTGCGAAATTGTCTGAAGGGATCAACTTAAGTGATGGGATGGGCCGATGTATAGTCATGGTTGGACTGCCGTATGCTAGCCCATCTAATATAGAGTTGTTGGAGAGGATAAAGCATATTGATGGTTTTCAAAATTTAAAGCTTGAGAATTCTAGCGTTCCTGCCAGTTATGATCTATACAGTGGAAATGTAGAAGGTGGTTTTGACATCTTAAGAAGTTGCACTCATAGAGGAAAAGAGTACTATGAGAATCTCTGCATGAAAGCTGTAAATCAATCAATAGGTAGAGCGATCCGTCACATTAATGACTATGCTGCAATTTTGTTGGTTGACACAAGATATGCATCTGATTCCTTAAAACGAAGTTTTTCTCACCCAGTCACTAAGCTCCCTCAGTGGATAAAAGATGGTCTTGTTTCTTCTATTAACTATGGTGAGAGTATTGTCAGTTGCCAGAGGTCAGTTGCTTTCTTCACAGGGCAAATGCCATTTCCAGAAGGCAACAGTTACCAACCACACAGCTCTTTATTTGAAAATCTGAATGTGGACAAAATTGGAGAGCTTATAACTATGACTGCCCTTCGAGGTGGACACTTGGAGAAGAGAAAGCCACTCCCTTTCATAGTAGAACCACAAATGCTGCTAATACAAACTTTTCGCAAGACCAAGGTTTTCATTCACAAAAGCTTCCGAAATTTCATGTTTTTCTTCTTTGGAGAGTACCAAAAACTTCCTAGATCTCTTTCCTTCAACCCATTCTTTTGTAGAATTGGCAATGCAAGAGCTCACACAAGCGACCAATTTTACAATGAGTTTTATGATCTTCTGCAGAGTGACCTCAGCAGAATAAACATGTATGGTAACATGTCCAGGTCAGCAACGCGAGATGCTTCGTGTACTGGAAGCTTCATGTGTTTTGCCAAGCTAAGTTCGCAAAAGAGCAAGATTGAGGAGAGACCACAAGAGAAGAAGAACAAAGGAAGCTCACACCTCAGAAAAAAAGAGGACTTAAATTCGCAAAACATGAACCAGAAAGCTCATGTTTTAGCACAAAAGATGAAGGCAATGGATATGGTGCATGCGGGTGATCTAGAGCACGTACTAGACATAGAAGAGGCACTGCACTACTACTCTCGGCTTAAGAGCCCTGTCTATGTAGATATTGTGGACAAATTTTTCATGGACATTCAGTCAGAGTTATCTGTTTCGCAGCCCTGTGCCGGCAGCATCAGACCAATGAAAGACTTGGTCCAATCCGGTTGA 3501 0.4139 MEADEGAAKFPGFPFEPYSIQIDFMNSLYQSLNQGGVSMLESPTGTGKTMSVICSALQWVLDRRLQQEALCDENPGNGSGGRVGLDDEPDWMRDFIINKVENNKKEEKRGFVWGKPHNNKNSKEIRKDFRVMGAGEEKGGESLQKKIDAVDEEFLLEEYESEDERGPGSVVSKRKAVNTSFSSSSEDESSEEEEEEEKKWKVYFCSRTHSQLSQFIKELRRTVFATEMKVVSLGSRKNLCINEEVVELGNSTRINERCLELQKKKKTDATKVKNVKVGAGIRRTKATSSGCPMLRKHRVQQEFRNEVFQQRPLDIEDLANLGRTMGTCPYYGSRSIVRRADLVVLPYQSLLSKSSREALGLNLKSTIVIIDEAHNLADSLINMYDSKITLSQLETVHSHLERYFVRFRNLLGPTNRRYIQTLMVLTQAFLRVLLDDKDGNIIGSCCDIDQSSEENRASDFTMAINDFLFEHNIDNINLVKLLKYVKESNIMHKLSGYGEKLATLEKIPAHHKIEEHAEEGSCVSAFQTLVDILLSLTHNDGDGRIIISRSRSTSIGKQGGYIKYVMLSAEKIFSEIVDEAHAVVLVGGTLQPIEETRERLFPWLPSNQLHFFSCGHIVPPDSIMPIALTRGPTGRTFDFSFNSRNSPDMMRELGLLLCNLATVVPEGIVVFFPSFDYENRVYKYWQSSGILERITKRKRVFREPRNNMDVESVLKEYKDNIYTSSGMNSEINQASYSGGAILLAVVGAKLSEGINLSDGMGRCIVMVGLPYASPSNIELLERIKHIDGFQNLKLENSSVPASYDLYSGNVEGGFDILRSCTHRGKEYYENLCMKAVNQSIGRAIRHINDYAAILLVDTRYASDSLKRSFSHPVTKLPQWIKDGLVSSINYGESIVSCQRSVAFFTGQMPFPEGNSYQPHSSLFENLNVDKIGELITMTALRGGHLEKRKPLPFIVEPQMLLIQTFRKTKVFIHKSFRNFMFFFFGEYQKLPRSLSFNPFFCRIGNARAHTSDQFYNEFYDLLQSDLSRINMYGNMSRSATRDASCTGSFMCFAKLSSQKSKIEERPQEKKNKGSSHLRKKEDLNSQNMNQKAHVLAQKMKAMDMVHAGDLEHVLDIEEALHYYSRLKSPVYVDIVDKFFMDIQSELSVSQPCAGSIRPMKDLVQSG 1166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02359 1166 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 389 IPR027417 -
Spst4g02359 1166 MobiDBLite consensus disorder prediction 1060 1087 - -
Spst4g02359 1166 Gene3D - 176 430 IPR027417 -
Spst4g02359 1166 SMART ultradead3 13 451 IPR014001 -
Spst4g02359 1166 Pfam Helicase C-terminal domain 657 872 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Spst4g02359 1166 Pfam DEAD_2 204 393 IPR010614 GO:0003677|GO:0003678|GO:0005524
Spst4g02359 1166 MobiDBLite consensus disorder prediction 1060 1086 - -
Spst4g02359 1166 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 7 422 IPR014013 GO:0005524
Spst4g02359 1166 CDD SF2_C_XPD 621 860 - -
Spst4g02359 1166 Gene3D - 635 875 IPR027417 -
Spst4g02359 1166 NCBIfam DNA repair helicase (rad3) 184 894 IPR013020 GO:0003678
Spst4g02359 1166 Gene3D - 14 75 IPR027417 -
Spst4g02359 1166 MobiDBLite consensus disorder prediction 158 193 - -
Spst4g02359 1166 SMART deadxpd 9 416 IPR006554 GO:0003678|GO:0016818
Spst4g02359 1166 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 13 896 IPR045028 -
Spst4g02359 1166 SMART Cxpdneu3 675 862 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02359 Spst-Chr4 64204572 64212314 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02359 K11273 - gmx:106794132 1439.86