Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02354 ATGGCATCTCGCCGCCGCATGCTATTGAAGGTCATAATCCTCGGAGATAGCGGGGTTGGTAAAACATCACTGATGAATCAGTATGTGAATCGTAAATTTAGTAATCAATATAAGGCAACCATTGGTGCAGATTTTCTTACCAAGGAGGTTCAATTTGAAGATAGGTTGTTCACATTACAGATTTGGGATACTGCTGGTCAAGAGCGGTTTCAGAGTCTTGGTGTGGCTTTCTACCGTGGTGCAGACTGCTGTGTACTTGTTTATGATGTAAATGTCATGAAATCCTTTGACAACCTTAACCACTGGCGAGAAGAATTTCTTATTCAGGCTAGTCCATCTGATCCTGAAAACTTCCCATTTGTTGTATTGGGAAACAAAATAGACGTTGATGGTGGAAATAGCAGAGTTATTTCTGAGAAGAAAGCAAAGGCGTGGTGTGCTTCAAAGGGAAACATACCATACTTTGAGACCTCTGCAAAAGAAGGATTTAATGTTGAAGCTGCTTTCCAGTGCATAGCAAAAAATGCGCTGAAGAATGAACCCGAAGAAGAAATGTACCTGCCTGACACAATTGATGTTGGTGGTGGTGGTGGACGACAACAGAGATCTACTGGATGTGAATGTTGA 627 0.4179 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNHWREEFLIQASPSDPENFPFVVLGNKIDVDGGNSRVISEKKAKAWCASKGNIPYFETSAKEGFNVEAAFQCIAKNALKNEPEEEMYLPDTIDVGGGGGRQQRSTGCEC 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02354 208 NCBIfam small GTP-binding protein domain 10 172 IPR005225 GO:0005525
Spst4g02354 208 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 186 IPR027417 -
Spst4g02354 208 SMART ras_sub_4 6 179 - -
Spst4g02354 208 ProSiteProfiles small GTPase Ras family profile. 3 208 IPR001806 GO:0003924|GO:0005525
Spst4g02354 208 CDD Rab7 9 182 - -
Spst4g02354 208 PRINTS Transforming protein P21 ras signature 32 48 - -
Spst4g02354 208 PRINTS Transforming protein P21 ras signature 116 129 - -
Spst4g02354 208 PRINTS Transforming protein P21 ras signature 9 30 - -
Spst4g02354 208 PRINTS Transforming protein P21 ras signature 154 176 - -
Spst4g02354 208 PRINTS Transforming protein P21 ras signature 50 72 - -
Spst4g02354 208 Pfam Ras family 10 177 IPR001806 GO:0003924|GO:0005525
Spst4g02354 208 FunFam Ras-related protein Rab7 1 189 - -
Spst4g02354 208 SMART rho_sub_3 11 179 IPR001806 GO:0003924|GO:0005525
Spst4g02354 208 PANTHER RAB FAMILY 1 206 - -
Spst4g02354 208 SMART rab_sub_5 9 179 - -
Spst4g02354 208 SMART ran_sub_2 14 201 - -
Spst4g02354 208 Gene3D - 1 190 IPR027417 -
Spst4g02354 208 ProSiteProfiles small GTPase Rab1 family profile. 4 208 - -
Spst4g02354 208 ProSiteProfiles small GTPase Rho family profile. 2 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02354 Spst-Chr4 64177136 64179559 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02354 K07897 - gmx:100305824 417.927