Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02338 ATGGACAAAACTGCATTATGTTCGTCCACCTTTGTGTTGTCACCCTTTCTATTTCTGAAGCACCGCAATACACCCTATTTCAGCTTTCGTGGGACCAACACTCTACATGATAATAGGCGACCCAATTGGCCAAAGCTTTTGTCACTGCGCTCAAAATCTGCACTTGCCCGAGCTCACTCTTTGGAAATAATGGCAGAGGGTTCGAATCGCATAGCCCTTCTCGTGATCGACATGCAGAAAGATTTTATAGAAGATGGGGGTCCCATGCTTGTCAAAGGGGGGAAAGAAATTGTCCCAAATGTGATTAAGGCTGTGGATGTTGCTAGGCAGCGTGGAATTCTCGTTGTTTGGGTAGTACGGGAACATGATCCCTTAGGAAGAGATGTTGAGCTCTTTCGCCGGCATCTCTATGCTGCAGGGAAAGTTGGTCCAACCTGTAAGGGAAGTGAAGGTGCAGAATTAGTTGATGGACTGGTAATCAAAGAAGGGGACTATAAACTAGTGAAAACCAGGTTCAGTGCATTCTTTCATACACATCTTCATTCACTTCTTCAAGGGGCAGGAATTAATAGTCTGGTAATCACTGGTGTTCAAACTCCTAACTGTATCAGACAAACTGTCTATGATGCTGTAGCACTGGACTATCAACCGGTAACTGTCATTATTGATGCTACAGCAGCAGCCACACCTGATATTCATCACGTGAACTCAAAGCTTGATCTGCATGAACCATGCTACTGTAACACTCTGGTGTTCAATTCCAAGACTAAAGGTGTTGATGTCTTTGGCTGTGTTGTGTACAGTGAAGCAAACCTGTGTTACTGTATGGCAGAGGATTGGAAGCGCACAGCCCTTCTTGTCATCGACATGCAGAAAGATTTTATAGAAGATTGGAGTCCTGTGGCACTAAAACCAGCGAAAGACATTGTTCCAAATGTGGTTAAGACAGTGGAAGTTGCCAGAGAGCGTGGCATGCTCATAGTTTGGGTTGTACGAGAACACGATCACTTAGGAAGAGATGTTGAGCTTTTTCGTCGGCATTATTATACAGAGCGGAAATTTAAAACAGCATGTAAAGGAAGTGAAGGTGCAGAATTAGTAGATGGGTTGGTAATTAAAGAAGAAGATTATAAGCTTGTGAAGACCAGGTTCAGTGCATTCTTTGCTACACACCTTCATTCAGTTCTTCAAGCAGCAGGAATTCATAATCTGGTGATCACTGGAATTCAAACTCCAAATTGTATCAGGCAAACTGTGTTTGATGCTGTAGCATTGGACTATCCACATGTGACTGTCATCGTTGATGCTACTACTGCAGCCACACCTGATGTTCATCAAGACAGAATTTCTGAGATGATGCGGAAACATTTTGGATGGTTTCAGCGAATTTGTTTGACATGGAAAATATTGGAGTTGCAACGCCAACATTACAAGAGTGGAGAGAAGGCAAGGCTTGATATGGAGCATGCAACTTTTCAATTTCATAGGTGTCGGTTGATCCGTCAATCAATGGAGAAGGAGGTTGAGCTTTGTTCAGTTCAACCCCAAATGGCTTCTCACCGCATTTTTCAACTCCAGAGGCGTGGAAAGGGAGGCCTCGTTACCATGCCTTTCATCATAGCAAATGAAGCACTTGCGAGAGTCGCAACCTTGGGGCTTCTGCCCAATATGATATTGTATTTGATGGGAAATTACAATCTTCATTTGGCCGAAGCTACCCAGATACTCCTCTTATCCGTTGCAACCACCAATCTCATGCCTCTTCCTGGCGCCTTCATTGCTGATTCTTATCTGGGTCGCTTCCTCGCTGTTGGTTTAGGTTCCTTCATCACTTTCCTGGGAATGACACTCCTGTGGTTAACAGCAATGATCCCAGAGGCTCGGCCTCCTCATTGCAATTCTGAAACTGAAAGATGTGTATCCGCGACATCTGGGCAAATGGCAATGTTAATCTCTTCCCTTGCTCTCATGTCCATCGGAAATGGTGGCCTGTCATGTTCCCTGGCCTTTGGTGCTGACCAGGTGAATAGAAAAGATAACCCCAATAATCAAAGGGCCTTGGAGATATACTTCAGCTGGTACTATGCTTCCTCCGCGATATCAGTCATAATTGCCTTCACTGGAATTGTGTATATCCAAGATCATCTTGGATGGAAATTGGGTTTTGGAATTCCAGCAGCACTTATGTTCTTGTCCACGTTTCTGTTCGTTCTGGCTTCTCCACTTTATGTAAAGAATAAAACACACAGCAGCTTGCTCACTGGCTTTGCACGTGTCGTTGTTGTAGCCTATAAGAACAGGAAACTAAGATTACCACATAAGATCTCAGATGGAATGTATCATCATAACAAGGACTCTGATCTAGTTGTTCCAACTGATAAACTAAGGTTTCTGAATAAAGCTTGCTTCATTAAGGACCCAGAAAAAAATCTAGGCTCTGATGGGTCAGCCTCGAACCCATGGAGTCTCTGCACAGTTGATCAAGTAGAAGAACTAAAAGCCATTGTAAAAGTTATTCCCCTGTGGTCTACGGGGATCACGATGTATCTTCACATTGGAGGCTCATTTGGATTGCTGCAAGCTAAATCCCTTAACAGACATATCACTCCAAATTTTGAAGTTCCAGCTGGATCTTTGATCGTAATCATGATATTTACAATTTTTATTTGGATAGCTCTTTATGATCGTGTCATTATTCCTCTAGCATCAAAACTCAGAGGCAAACCAATTAAGATCAGTTCAAAGACAAGAATGGGTCTTGGGTTGTTTTTCTCCTTTCTCCACTTGGTAACTGCAGCAATTGTTGAGACTACAAGGAGAAGGAGAGCAATTAGTGAGGGACATGTTAATGACACACAAGCAGTGTTGAATATGTCTGCAATGTGGCTGTTTCCTCAACTTTGCTTGGGTGGCATAGCTGAAGCATTCAATGCAGTAGGCCAAAATGAGTTTTATTACACTGAGTTTCCGAAGACTATGTCAAGCATTGCTTCTTCCTTTTCTGGACTGGGAATGGCTGTAGGATATGTGCTTTCTTCTTTACTATTCACTGTTGTGGAAAAGGTTACTTCAAGAGGGGGAAAGGATGGATGGATCTCAGATAACATTAACAAGGGTCATTTTGACAAGTACTACTGGGTTCTTGTCACATTCAGTGCTGTTAATTTACTGTATTATCTAGTATGCAGTTGGGCTTATGGACCCACTGCTGATCAAGAATCAAAGTTAACTGAAGAAAATGGTTCCAATGAGGAAGAATTACCACTAATTGGAGCCAGGACTGATGGTCCATTTGATAAGGTATCACAGGTTAGTGAAGAAATTTTAAGAACTTCACATAAAACTTTAACGGATTGA 3357 0.4266 MDKTALCSSTFVLSPFLFLKHRNTPYFSFRGTNTLHDNRRPNWPKLLSLRSKSALARAHSLEIMAEGSNRIALLVIDMQKDFIEDGGPMLVKGGKEIVPNVIKAVDVARQRGILVVWVVREHDPLGRDVELFRRHLYAAGKVGPTCKGSEGAELVDGLVIKEGDYKLVKTRFSAFFHTHLHSLLQGAGINSLVITGVQTPNCIRQTVYDAVALDYQPVTVIIDATAAATPDIHHVNSKLDLHEPCYCNTLVFNSKTKGVDVFGCVVYSEANLCYCMAEDWKRTALLVIDMQKDFIEDWSPVALKPAKDIVPNVVKTVEVARERGMLIVWVVREHDHLGRDVELFRRHYYTERKFKTACKGSEGAELVDGLVIKEEDYKLVKTRFSAFFATHLHSVLQAAGIHNLVITGIQTPNCIRQTVFDAVALDYPHVTVIVDATTAATPDVHQDRISEMMRKHFGWFQRICLTWKILELQRQHYKSGEKARLDMEHATFQFHRCRLIRQSMEKEVELCSVQPQMASHRIFQLQRRGKGGLVTMPFIIANEALARVATLGLLPNMILYLMGNYNLHLAEATQILLLSVATTNLMPLPGAFIADSYLGRFLAVGLGSFITFLGMTLLWLTAMIPEARPPHCNSETERCVSATSGQMAMLISSLALMSIGNGGLSCSLAFGADQVNRKDNPNNQRALEIYFSWYYASSAISVIIAFTGIVYIQDHLGWKLGFGIPAALMFLSTFLFVLASPLYVKNKTHSSLLTGFARVVVVAYKNRKLRLPHKISDGMYHHNKDSDLVVPTDKLRFLNKACFIKDPEKNLGSDGSASNPWSLCTVDQVEELKAIVKVIPLWSTGITMYLHIGGSFGLLQAKSLNRHITPNFEVPAGSLIVIMIFTIFIWIALYDRVIIPLASKLRGKPIKISSKTRMGLGLFFSFLHLVTAAIVETTRRRRAISEGHVNDTQAVLNMSAMWLFPQLCLGGIAEAFNAVGQNEFYYTEFPKTMSSIASSFSGLGMAVGYVLSSLLFTVVEKVTSRGGKDGWISDNINKGHFDKYYWVLVTFSAVNLLYYLVCSWAYGPTADQESKLTEENGSNEEELPLIGARTDGPFDKVSQVSEEILRTSHKTLTD 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02338 1118 Pfam Isochorismatase family 72 234 IPR000868 -
Spst4g02338 1118 Pfam Isochorismatase family 283 460 IPR000868 -
Spst4g02338 1118 PANTHER OS02G0276400 PROTEIN 69 236 - -
Spst4g02338 1118 Gene3D MFS general substrate transporter like domains 507 1074 IPR036259 -
Spst4g02338 1118 SUPERFAMILY Isochorismatase-like hydrolases 68 235 IPR036380 -
Spst4g02338 1118 SUPERFAMILY Isochorismatase-like hydrolases 276 458 IPR036380 -
Spst4g02338 1118 MobiDBLite consensus disorder prediction 1075 1098 - -
Spst4g02338 1118 ProSitePatterns PTR2 family proton/oligopeptide symporters signature 1. 590 614 IPR018456 GO:0006857|GO:0016020|GO:0022857
Spst4g02338 1118 SUPERFAMILY MFS general substrate transporter 538 1063 IPR036259 -
Spst4g02338 1118 Pfam POT family 603 1032 IPR000109 GO:0016020|GO:0022857|GO:0055085
Spst4g02338 1118 Gene3D - 266 486 IPR036380 -
Spst4g02338 1118 Gene3D - 47 250 IPR036380 -
Spst4g02338 1118 CDD cysteine_hydrolases 284 452 - -
Spst4g02338 1118 CDD MFS_NPF1_2 536 1066 - -
Spst4g02338 1118 CDD cysteine_hydrolases 72 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02338 Spst-Chr4 64078638 64089214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02338 527 1086 Organic Solute Cotransporters AT1G52190 55.634 0.0 675
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02338 K26551 - gmx:100804235 1093.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02338 4 64078638 64089214 Spst4g02338 4 64078638 64089214 ECH