Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02312 ATGGGGAGCTCTGAAGGGGTGGGGGCATCGTCGACTCAATACGGTATCACGAAGCCCATTTCGACGGCTGGGCCAACGGTTTCTGATTTGCAAAGAACTATTGAGTTAGAAAAGTTTCTCGTTGTCTCGGGACTTTATGAGAATAAAGAAGAAACTGCTAAGAGAGAAGAGGTTCTTCACCGACTTGAACAGATAGTAAAAAAATGGGTGAAGCAACTTACGCGCCTAAGGGGATACACCGATCAAATGGTGGAAGATGCAAATGCTATTATTTTTACTTTTGGTTCTTATCGGCTTGGTGTTCATGGTCCTGGGGCTGACTTAGACACAATATGCATTGGACCTTCCTATGTGAATCGGGAGGAGGATTTTTTCTACACATTGCATGATATCCTAGCTAACATGGAGGAAGTCACCGAATTGCAACCAATTCCGGATGCTCACGTCCCAGTTTTGAAATTCAAGTTTGATGGAATATCAATAGACCTCCTTTATGCCAGTATTTCTCGCTTGATTGTACCTGAAGACTTGGTTATTTCTGATGTCTCCGTTCTACACAATGTTGACGAGCCTACTGTGCGAAGTTTGAATGGCTGTAGAGTTGCAGATCAAATTCTGAAGCTTGTTCCTAATGTTGAGCACTTTCGCACAACACTTCGGTGCCTGAAATTTTGGGCCAAAAGGCGAGGCATTTATTCCAATGTGACAGGTTTTCTTGGTGGTGTTAACTTGGCACTTCTTGTAGCTAGAGTGTGCCAGTTGTATCCAAATGCAGTTCCAAGTATGCTTGTTTCTCGATTCTTTAGGGTATATACACAGTGGCGGTGGCCAACTCCTGTCATGTTATGTCCAATAGAGGAAAATGAACTTGGTTTTTCTGTTTGGCATCCCCGCAATCCTCGTGACCGATCCCATCTCATGCCAATTATTACGCCTGCCTATCCCTGTATGAATTCTAGTTATAATGTTTCTACTAGCACACTTCGTGTTATGATGGAACAGTTCCAATTTGGCAACAAAATCTGTGGGGATGTAGAACTGAATAAAGGTTGTTGGAAGGCTCTGTTTGAACCTTATGGGTTTTTTGAAAGTTATACAAACTACTTGCAAGTTGACGTAGTTGCTGCTGATGTTGATGACTTGCGCAATTGGAAAGGTTGGGTGGGATCACGCCTTCGGCAGCTGACTTTGATGATTGAGCGGGACACTTTTGGGAAGTTGCAGTGCCATCCCTTTCATCAAGAGTATACAGATACCTCAAGGCAGTGTGCACATTGTGCATTCTTTGTTGGTTTGCAGAGGAAGAAAGGAGAGTTAGTTCAGGAAGGTCAACAATTTGATATACGAGGAACAATTGAAGAATTTTTGCATTCGGTTAATATGTATATGTTCTGGAAACCAGAGATGGAGATTTATGTTTCTCATGTTCGTAGAAGGCAAATACCATGCTATGTGTTTCCTGATGGTTATAAACGAATGCGACCATCAAGGCCAACGTCAAAATCTAACAATCATAAATCATTTCATAAAGATGAGGTTGCTGGGACTGAACATGTTGAGAGAATTCGTAAGAGGAAGAACATTGATGGGTTGGGTGTCATCGAGGATGCTACACTGAAAAAGCAATGTACTAGTCCTCCTGAAGATAGAAGGGCAAGTCGCAGTGGCCTTCATACTGGTCGTTCGTCTGTTAATGCTGTGTCTGATAGTCAACATTTGAGAAATATGGAGTGTAATCATTTGTCAAACAGTGGGCAAGAGTTGGAAAGGACAGAGTCTCCTGAGTCTACCTCTAATTCGAGTGGGATTGCTTCTGTTACAAGTGATAGTGGTTCTTCTGAAGATATTGGAGCTGTATCTGTGTCAGGTTGTCTTGAAGATAGCAGCAGAAGTGTTGATATGATGAACAATAATGGCAGGTTTGAGAGTAGTACTTGTGGGAACAATTCTATGAAGCTGGTGAAAAACAGAGTGACAAGTGGTCATGAAGTATTTCAACACGAGCTACAGGAGCAGTTGCAGCAAAATGCAATGCTAGGGATGGTTCTTGATTCTACAGGAAAGGTTCATTTAGAGGCTGTGCAACGACCGTGTGAAGGAGCAGTAAGCTTGCTTGGCCATTCAAGCATGCAAATTGCAACTGATCCGCATCAAGCTGAAGAGCTGGAGCTAGTTAGGGGGCGAGCGTGGGGGATTGGGTTGGGTTGGCTAGTGTTTCCTAGCAGAGGAGGTTCGTCGAACGAACCTACATTTAGGTGTAGTGATACCGTTATGCATGATACAAAGGCAAACACTTGGTTGCGCGTTAAAGCCGATCAAGAAAGCAATATGAGGAAGGTGGTGGTGTGTGCGACGGTGATTGGAGCCGCGACGGCTTGCGCGGTGGGTGCGGTGGCGGTGCAGAGGTACGTGAGGAAATGTCGACAATGGGGAAGAGCGATGGAAATATTACAGGAATTGGAGGAGAAGTGTGCGACGCCGACGTGGAAGCTGAAGCTGGTTGCGGATGCCATGAACGTGGAGATGCACGCTGGCCTTGCTTCTGAAGGTGGTAGCAAGCTCAAGATGCTCATCACTTACGTTGATAAGCTCCCAACTGGGAATGAGAAAGGACTATATTATGCATTGGACCTTGGAGGGACTAATTTTCGGGTGTTACGTGTGCAATTGGGAGGCAAGAATGGTGGTATCATTAGTCAAGAATTTACTGAGGTGTCAATTCCTCCCAATCTGATGGTTGGGACATCAGATGCACTCTTTGACTATATTGCAGCAGAACTTGGAAAATTTGTTGCCCAAGAGAATCAAGATTTTCAAGTTCCTCCCGGTAGACAGAGAGAGATAGGTTTTACCTTTTCCTTTCCTGTCATGCAAACTTTAATTAATTCTGGGACTCTAATCAAGTGGACAAAAGGCTTCAACGTAGAAGACGCTGTAGGTAAAGACGTTGTGTCAGCATTAATGAAAGCCATTCAGAAACAAGGCCTTGATATGCACGTAACTGCTCTGGTCAACGATACAGTAGGGACATTAGCAGGAGGCCGATACACAAACAACAATGTCATTGCTGCTATTATTTTAGGTACCGGAACAAATGCTGCCTATGTGGAGCGTGTTCAAGCAATACCAAAATGGCATGGTCCTTTGCCAGATTCGGGTGAAATGGTTATCAACATGGAGTGGGGTAACTTTCGCTCATCACACCTTCCATTAACTGAGTATGATCGTGCACTAGATGCTGAGAGTTTAAACCCCGGTGAACAGATTTTTGAAAAGATAATTTCGGGCATGTACTTGGGAGAAATTGTTCGAAGAGTAATATGCAAAATGGCCGAAGAAGCTTTACTTTTTGGCGACCATGTTCCCCCAAAATTAAAAGAGCCCTTTATGTTAAGGACACCTGACATGTCTGCTATGCATCATGATTCCTCTGCTGATCTCAATGTAGTTGGAAGCAAACTGCAGAACGTCTTCGAGATATCTGATACTTCATTGGAAGTACGGAAGGTGGTTGTACATATCTGCAATATTGTTGCTACCCGTGGTGCTCGTCTCTCTGCAGCTGGTATCTTAGGTATCTTGAAGAAATTAGGAAAAGACACTCTGAATGATGTCGAGGGTGAGAAAATTGTGATATCCATGGATGGTGGATTGTACGAGCACTACACTGAGTATAGCAAGTGCCTAGAGAATACCGTTAAAGAATTGGTTGGTGATGATGTCTCAGAAAGTATTATAATTGAGCATTCCAATGATGGTTCAGGAATTGGTGCAGCCCTTCTTGCAGCCTCTCACTCCCAGTACCTTGATGGTTTGACTAGAACCAAGAAAGAGATGAAAAAGTTATTGAGTAGAGTGCCATCAAGGCAAGGCAAGGCAAAGTCATTTGCTAGCTTACTGTGTCAAGGGCATGAGGAATATATTTATGAGGGGTCAGCGCTGCAAGGCTTGCATTGCTTTACTTCCTATGCTAAACAACCTAACTTTGTTGCTTCAGGTTGCGTGCGCGATGCTCTAATTTCACTCTTTGTTTTGGTAATGTTAGGCAAAAGGGAATCTCACTAG 4065 0.4371 MGSSEGVGASSTQYGITKPISTAGPTVSDLQRTIELEKFLVVSGLYENKEETAKREEVLHRLEQIVKKWVKQLTRLRGYTDQMVEDANAIIFTFGSYRLGVHGPGADLDTICIGPSYVNREEDFFYTLHDILANMEEVTELQPIPDAHVPVLKFKFDGISIDLLYASISRLIVPEDLVISDVSVLHNVDEPTVRSLNGCRVADQILKLVPNVEHFRTTLRCLKFWAKRRGIYSNVTGFLGGVNLALLVARVCQLYPNAVPSMLVSRFFRVYTQWRWPTPVMLCPIEENELGFSVWHPRNPRDRSHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFQFGNKICGDVELNKGCWKALFEPYGFFESYTNYLQVDVVAADVDDLRNWKGWVGSRLRQLTLMIERDTFGKLQCHPFHQEYTDTSRQCAHCAFFVGLQRKKGELVQEGQQFDIRGTIEEFLHSVNMYMFWKPEMEIYVSHVRRRQIPCYVFPDGYKRMRPSRPTSKSNNHKSFHKDEVAGTEHVERIRKRKNIDGLGVIEDATLKKQCTSPPEDRRASRSGLHTGRSSVNAVSDSQHLRNMECNHLSNSGQELERTESPESTSNSSGIASVTSDSGSSEDIGAVSVSGCLEDSSRSVDMMNNNGRFESSTCGNNSMKLVKNRVTSGHEVFQHELQEQLQQNAMLGMVLDSTGKVHLEAVQRPCEGAVSLLGHSSMQIATDPHQAEELELVRGRAWGIGLGWLVFPSRGGSSNEPTFRCSDTVMHDTKANTWLRVKADQESNMRKVVVCATVIGAATACAVGAVAVQRYVRKCRQWGRAMEILQELEEKCATPTWKLKLVADAMNVEMHAGLASEGGSKLKMLITYVDKLPTGNEKGLYYALDLGGTNFRVLRVQLGGKNGGIISQEFTEVSIPPNLMVGTSDALFDYIAAELGKFVAQENQDFQVPPGRQREIGFTFSFPVMQTLINSGTLIKWTKGFNVEDAVGKDVVSALMKAIQKQGLDMHVTALVNDTVGTLAGGRYTNNNVIAAIILGTGTNAAYVERVQAIPKWHGPLPDSGEMVINMEWGNFRSSHLPLTEYDRALDAESLNPGEQIFEKIISGMYLGEIVRRVICKMAEEALLFGDHVPPKLKEPFMLRTPDMSAMHHDSSADLNVVGSKLQNVFEISDTSLEVRKVVVHICNIVATRGARLSAAGILGILKKLGKDTLNDVEGEKIVISMDGGLYEHYTEYSKCLENTVKELVGDDVSESIIIEHSNDGSGIGAALLAASHSQYLDGLTRTKKEMKKLLSRVPSRQGKAKSFASLLCQGHEEYIYEGSALQGLHCFTSYAKQPNFVASGCVRDALISLFVLVMLGKRESH 1354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02312 1354 CDD NT_PAP_TUTase 54 209 - -
Spst4g02312 1354 Gene3D - 15 356 - -
Spst4g02312 1354 MobiDBLite consensus disorder prediction 538 617 - -
Spst4g02312 1354 FunFam Putative poly(A) polymerase gamma 190 356 - -
Spst4g02312 1354 FunFam Phosphotransferase 996 1251 - -
Spst4g02312 1354 Gene3D Beta Polymerase, domain 2 47 203 IPR043519 -
Spst4g02312 1354 FunFam Poly(A) polymerase alpha, putative 47 203 - -
Spst4g02312 1354 SUPERFAMILY Actin-like ATPase domain 1021 1269 IPR043129 -
Spst4g02312 1354 Pfam Poly(A) polymerase central domain 15 358 IPR007012 GO:0043631|GO:1990817
Spst4g02312 1354 SUPERFAMILY PAP/OAS1 substrate-binding domain 210 358 - -
Spst4g02312 1354 MobiDBLite consensus disorder prediction 557 617 - -
Spst4g02312 1354 SUPERFAMILY Actin-like ATPase domain 804 1018 IPR043129 -
Spst4g02312 1354 Gene3D - 837 1251 - -
Spst4g02312 1354 MobiDBLite consensus disorder prediction 542 556 - -
Spst4g02312 1354 ProSitePatterns Hexokinase domain signature. 948 973 IPR019807 GO:0004396|GO:0005524|GO:0006096
Spst4g02312 1354 PANTHER POLY A POLYMERASE 9 520 - -
Spst4g02312 1354 Pfam Nucleotidyltransferase domain 88 157 IPR002934 GO:0016779
Spst4g02312 1354 CDD NBD_sugar-kinase_HSP70_actin 875 1037 - -
Spst4g02312 1354 ProSiteProfiles Hexokinase domain profile. 811 1263 IPR001312 GO:0001678|GO:0004396|GO:0005524|GO:0005536|GO:0005975
Spst4g02312 1354 SUPERFAMILY Nucleotidyltransferase 14 208 IPR043519 -
Spst4g02312 1354 Pfam Hexokinase 817 1016 IPR022672 GO:0005524|GO:0005975|GO:0016773
Spst4g02312 1354 PRINTS Hexokinase family signature 1000 1016 - -
Spst4g02312 1354 PRINTS Hexokinase family signature 948 973 - -
Spst4g02312 1354 PRINTS Hexokinase family signature 1023 1037 - -
Spst4g02312 1354 PRINTS Hexokinase family signature 1088 1110 - -
Spst4g02312 1354 PRINTS Hexokinase family signature 1171 1193 - -
Spst4g02312 1354 PRINTS Hexokinase family signature 1248 1264 - -
Spst4g02312 1354 PRINTS Hexokinase family signature 874 890 - -
Spst4g02312 1354 MobiDBLite consensus disorder prediction 504 521 - -
Spst4g02312 1354 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 360 487 IPR011068 GO:0003723|GO:0016779|GO:0031123
Spst4g02312 1354 MobiDBLite consensus disorder prediction 492 521 - -
Spst4g02312 1354 Pfam Poly(A) polymerase predicted RNA binding domain 361 420 IPR007010 GO:0003723|GO:0043631
Spst4g02312 1354 Gene3D Poly(A) polymerase predicted RNA binding domain 360 476 - -
Spst4g02312 1354 Gene3D - 859 1262 - -
Spst4g02312 1354 FunFam Nuclear poly(A) polymerase 4 360 476 - -
Spst4g02312 1354 Pfam Hexokinase 1023 1263 IPR022673 GO:0005524|GO:0005975|GO:0016773
Spst4g02312 1354 FunFam Phosphotransferase 859 1027 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02312 Spst-Chr4 63858545 63873572 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02312 K14376 - gmx:100783237 1157.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02312 4 63858545 63873572 Spst4g02312 4 63858545 63873572 ECH