Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02288 ATGGACAGCGCCAAGAAGCCTGAAGTTTTTGATTGGATGGTCAAAATTAGAAGGAAGATTCATGAGAATCCAGAATTGCGTTATGAGGAATTTGAGACCAGTAAACTGATTAGAGAGGAATTGGATCAACTGGGTATCCCGTACAAACACCCAGTTGCTGTCACTGGTGTTATTGGTTTCATTGGGACAGGAAGCTCTCCTTTTGTTGCATTAAGAGCTGACATGGATGCGCTTCCCATCCAGGAAATGGTGGAATGGGAGCACAAGAGTAAAGTACCAGGAAAGATGCACGCGTGCGGTCATGATGCTCATGTCACTATGCTTCTTGGGGCAGCAAAGATTCTCAAACAGCATGAAAAAGAGATACAGGGAACTGTTGTTCTTGTTTTCCAACCAGCGGAGGAGGGAGGTGCAGGGGCTAAGAAAATTTTAGATGCTGGAGCCTTAGATAATGTTACTGCTATCTTTGCACTACATGTGATGCCTGACATTCCACTAGGTGAGGTGGCCTCAAGGTCTGGTCCGATATTGGCCGGAGGTGGTGCCTTTGAAGCAATTATAACTGGAAAGGGAGGCCATGCAGCTATTCCCCAACATTCTATCGACCCTGTATTGGCGGCTTCTAATGTGATTATCAGCTTACAGCACCTTGTTTCTCGTGAGGCTGATCCTCTGGAACCCCAGAATTTCAAGGCAGTCATTCTGTCTTCTGTTGTGACAGTTACAAAGTTCCAAGGAGGTGGTGCATCCAATGTTATTCCAGATTATGTCACAATTGGTGGCACTTTCCGAGCTTTTTCTAAAGGAAGATTGGAGCAACTTAAACAGAGGATTAAACAGGTTGTCATTGGTCAAGCTGCTGTGCAGAGGTGTAATGCAACTGTCAGGTTCCTTGATGAAACGGTACCTTTCTACCCTCCAACTGTAAATGATGAAGAATTGCACAAGCTTTTTGTTGATGTAGCCGGGAATCTGCTTGGCATCAATAAAGTTAATACTGTCAAGACACCAATCATGGCCTCTGAAGACTTTGCTCTCTATCAAGAGGTCATACCTGGCTACTTCATCATGCTTGGAGTGAAGAGTGTATCACCTAATCCACTTCAGTCATTACACTCACCCTATCTCACAATCAATGAAGATGCACTTCCTTGTGGGGCTGCACTTCATGCATCACTGGCTACTACTTATCTTATAAAATATCAGCAGAATGTAGCCACGGTAGTCGGGAAATATCATGATGAATTATAA 1251 0.442 MDSAKKPEVFDWMVKIRRKIHENPELRYEEFETSKLIREELDQLGIPYKHPVAVTGVIGFIGTGSSPFVALRADMDALPIQEMVEWEHKSKVPGKMHACGHDAHVTMLLGAAKILKQHEKEIQGTVVLVFQPAEEGGAGAKKILDAGALDNVTAIFALHVMPDIPLGEVASRSGPILAGGGAFEAIITGKGGHAAIPQHSIDPVLAASNVIISLQHLVSREADPLEPQNFKAVILSSVVTVTKFQGGGASNVIPDYVTIGGTFRAFSKGRLEQLKQRIKQVVIGQAAVQRCNATVRFLDETVPFYPPTVNDEELHKLFVDVAGNLLGINKVNTVKTPIMASEDFALYQEVIPGYFIMLGVKSVSPNPLQSLHSPYLTINEDALPCGAALHASLATTYLIKYQQNVATVVGKYHDEL 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02288 416 FunFam N-acetyldiaminopimelate deacetylase 178 305 - -
Spst4g02288 416 SUPERFAMILY Bacterial exopeptidase dimerisation domain 182 296 IPR036264 -
Spst4g02288 416 PANTHER PEPTIDASE M20 FAMILY MEMBER 2 406 IPR017439 GO:0016787
Spst4g02288 416 PIRSF Amidohydrol_AmhX 2 402 IPR017439 GO:0016787
Spst4g02288 416 CDD M20_IAA_Hyd 13 398 IPR044757 GO:0009850|GO:0016787
Spst4g02288 416 SUPERFAMILY Zn-dependent exopeptidases 8 399 - -
Spst4g02288 416 Pfam Peptidase family M20/M25/M40 70 394 IPR002933 GO:0016787
Spst4g02288 416 Gene3D Zn peptidases 13 383 - -
Spst4g02288 416 Gene3D - 178 305 - -
Spst4g02288 416 NCBIfam amidohydrolase 13 386 IPR017439 GO:0016787
Spst4g02288 416 Pfam Peptidase dimerisation domain 182 282 IPR011650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02288 Spst-Chr4 63657056 63661931 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02288 K21604 - gmx:121172631 716.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02288 4 63657056 63661931 Spst4g02288 4 63657056 63661931 ECH