Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02281 ATGTTGTTGCGGACCAGTGGAATAATCGGGATGAATTCTGTAATGGATGACATGGCTTTGATTCAGCAAAGCCAAAGACATAACTTGGTTGTGAGAGAGCTTGGTGAGGAGATTGATTTAGAAATTGGACCTGGGGAGGATGACCCTTCATTTGGTAACGCTACTTTAATTGGTGCACCAATGCGGGAATCTTCCACAGAAGAACATGGTGAGAGCAAGCAGATGGGGATGGTTTCTCAGCTTTCTAATGATGCTCAAGATATGTCCAAGAACCAACAGGTGAAAAGGAAGAAAAAGGTTGTTAAAAGATGGAGAGAAGAATGGGCAGACACCTATAAATGGGCTTTCGTTGACACGAAAGATGGGACACATAGGATTTTCTGCTCTGTCTGCAGGGAGTATGGCCGGAAACATAGAAGAAATCCATATGGGAATGAGGGAAGTCGGAATATGCAAATGAGTGCCCTGGAAGAACACAATAATAGTTTGCTTCACAAAGAGGCTCTTCGTCTTCAAATGGCCTCCAAAGATAAAATTGTGGTCAACAAGCCTGTTTATGTAAAAGTGGGATCAATACTTGAAGCTACGCTAAAAAGGGACCCTCATGAGGTTGAATTCATTCAGTCAGTCCAGGAGGCAGTTCAAGCCCTTGAAAGAGTGATAGCAAAAAATTCTCGTTATGTTAACATCATGGAGCGCTTGTTGGAACCTGAACGAATGATTGTTTTTCGAGTTTCATGGGTGGATGATAGGGGTCAGACACATGTAAATCGGGGATTTAGGGTACAATTTAACCAGTCAATGGGTCCATGTAGGGGTGGTATTCGTTTTCATCCGTCAATGAACTTAAGTATTGCCAAGTTCCTTGGTTTTGAACAGACTTTAAAGAATGCCTTATCACCATACAAATTAGGAGGAGCAGCTGGAGGAAGTGATTTTGATCCCAAAGGAAAAAGTGATAATGAGATTATGAGATTTTGCCAAAGTTTCATGAGTGAGATGTATCGCTACCTGGGGCCTGACAAGGACCTTCCATCAGAGGAAATGGGTGTTGGTACTCGAGAAATGGGGTATCTTTTTGGACAGTATAGACGTCTAGCTGGTCATTTTCAGGTAATAACAAAGATGAGACCCAACAGCGTTGCAGGCAAAGAGCATCTTGATTTGTGGAAAACATGTTCATTTATGGTAACTCACATCTTGGATGGCAGTTCTGGTGTTGTTTCTGGAAGTTTTACAGGGCCAAGGATATTTTGGTCTGGCTCCAGTCTTCGACCTGAAGCTACTGGCTATGGACTGGTTTTCTTTGCCCAGCTCATGCTTGCTGACATGAATAAAGAACTTAAAGGATTAAGATGTGTTGTGAGCGGCTCTGGAAAGATTGCAATGCATGTTTTAGACAAGCTAATTGCTTATGGTGCTCTTCCCATTTCAGTATCAGATTCCAGAGGGTATTTGGTTGATGAGGATGGATTTGACTACATGAAAATGTCATTTCTAAGAGACATCAAAGCTCAGCAAAGAAGCTTGCGAGACTATTCAAAAACCTATGCTCGGTCCAAATATTATGATGAAGCAAAACCGTGGAATGAAAGGTGTGATGTTGCATTTGCTTGTGCTACACATAATGAAATTGATCAATCTGATGCCATTAATTTGGTTAATTCAGGTTGTCGTATACTAGTTGAAGGTTCAAACATGCCTTGTACCCCTGAAGCAGTTCAGATTTTCAGAAAAGCTAGTGTTCTCATTGCTCCTGCAATGGCTGCTGGTGCTGGAGGGGTTGTTGCTGGAGAACTTGAACTGAATCATGAATGCAGTTTGATGCACTGGTCACCGGAGGACTTTGAATCTAAATTGCAGGAAGCAATGAAACAGACTTATCAGAGAGCTATCAAAGCTGCAACTGATTTTGATTATCAAAAAGAAAGTCCTGAGGCTCTGGTGCATGGAGCAGTCATTTCTGCCTTTCTAACCATTGCTCAAGCCATGACTGATCAAGGTTCTATTTAG 2013 0.4198 MLLRTSGIIGMNSVMDDMALIQQSQRHNLVVRELGEEIDLEIGPGEDDPSFGNATLIGAPMRESSTEEHGESKQMGMVSQLSNDAQDMSKNQQVKRKKKVVKRWREEWADTYKWAFVDTKDGTHRIFCSVCREYGRKHRRNPYGNEGSRNMQMSALEEHNNSLLHKEALRLQMASKDKIVVNKPVYVKVGSILEATLKRDPHEVEFIQSVQEAVQALERVIAKNSRYVNIMERLLEPERMIVFRVSWVDDRGQTHVNRGFRVQFNQSMGPCRGGIRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMSEMYRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQVITKMRPNSVAGKEHLDLWKTCSFMVTHILDGSSGVVSGSFTGPRIFWSGSSLRPEATGYGLVFFAQLMLADMNKELKGLRCVVSGSGKIAMHVLDKLIAYGALPISVSDSRGYLVDEDGFDYMKMSFLRDIKAQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFACATHNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVQIFRKASVLIAPAMAAGAGGVVAGELELNHECSLMHWSPEDFESKLQEAMKQTYQRAIKAATDFDYQKESPEALVHGAVISAFLTIAQAMTDQGSI 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02281 670 Pfam Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 237 364 IPR006097 GO:0006520|GO:0016491
Spst4g02281 670 Gene3D Leucine Dehydrogenase, chain A, domain 1 235 370 - -
Spst4g02281 670 FunFam NADP-specific glutamate dehydrogenase 191 234 - -
Spst4g02281 670 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 421 668 IPR036291 -
Spst4g02281 670 PANTHER NADP-SPECIFIC GLUTAMATE DEHYDROGENASE 1-RELATED 143 382 - -
Spst4g02281 670 FunFam NADP-specific glutamate dehydrogenase 600 670 - -
Spst4g02281 670 FunFam Glutamate dehydrogenase 427 592 - -
Spst4g02281 670 Gene3D Glutamate Dehydrogenase, chain A, domain 3 191 234 - -
Spst4g02281 670 SMART ELFV_dehydrog_3 422 668 IPR006096 GO:0006520|GO:0016491
Spst4g02281 670 Pfam Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 421 668 IPR006096 GO:0006520|GO:0016491
Spst4g02281 670 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 190 371 IPR046346 -
Spst4g02281 670 Gene3D Glutamate Dehydrogenase, chain A, domain 3 599 670 - -
Spst4g02281 670 FunFam Glutamate dehydrogenase 235 370 - -
Spst4g02281 670 Gene3D - 427 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02281 Spst-Chr4 63604252 63614095 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02281 213 548 EF-hand Containing Proteins AT5G07440 26.176 8.80e-27 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02281 K00262 - gmx:100788009 1157.51