Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02279 ATGTCAAAAACAGCTGGATCAATTCTTGAAGCTACTCTAAAAAGGGACCCTCATGAGGTTGAATTCATTCAGGCCGTCCAGGATGCAGTTCAATCCCTTGAGAGAGTCATAGCAAAAAATTCTCGTTATGTTAATATCATGGAGCGCTTGTTGGAACCTGAACGAATTATTGTTTTTCGAGTTTCATGGGTGGATGATAGGGGAAAGACACATGTAAATCGGGGCTTTAGGGTACAATTTAACCAGTCAATGGGTCCATGTAGGGGTGGTATTCGTTTTCATCCATCAATGAATTTAAGTGTTGCCAAGTTCCTTGGTTTTGAACAGACTTTAAAGAATGCCTTATCCCCATACAAATTGGGAGGAGCAGCTGGTGGAAGTGATTTTGATCCAAAAGGAAAAAGTGATAATGAGATTATGCGATTTTGCCAAAGTTTCATGAGTGAGATGTATCGCTACCTGGGGCCTGACAAGGACCTCCCATCCGAGGAAATAGGTGTTGGAACCCGGGAAATGGGATATCTTTTTGGACAGTATAGACGTCTAGCTGGACATTTTCAGAGCACTTGTAGGAGTGACAACCATGACTTGAGGCCTTTATCCCAGAAGTTTATTGTCATTGTGGCTGCAACTGTTGATGTAAAGAAGATCCCCTTGCTACCATCGTTCCTGATGCTGGGAAGTTTTACAGGGCCAAGAATATTTTGGTCTGGATCCAGTCTTCGACCTGAAGCTACTGGTTATGGGCTGGTTTTCTTTGCCCAGATCATGCTTGCTGACATGAATAAAGAGCTTAAAGGATTAAGATGTGTTGTAAGTGGTTCTGGAAAGATCGCGATGCATGTTTTAGATAAGCTAATTGCTTATGGTGCTCTTCCCATTTCAGTATCAGATTCCAGAGGATATTTGGTTGATGAGGATGGATTTGACTACATGAAAATAGCACTTTTGAGAGACATCAAAGCTCAGCAAAGAAGTTTGCGAGACTATTCAAAAACCTATGCTCGGTCCAAATATTATGATGAAGCAAAACCGTGGAATGAAAGGTGTGATGTTGCATTTACTTGTGCATCACAGAATGAAATTAATCAATCTGATGCCATTAATTTGGTCAATTCAGGTTGTCGTATACTAGTTGAAGGTTCAAACATGCCTTGTACCCCTGAGGCAGTTCAGATTCTGAGGAAGGCTAGTGTTCTCATTGCTCCTGCAATGGCTGCTGGTGCTGGAGGGGTTGTGGCTGGAGAACTTGAACTGAATCATGAATGCAGCTTGATGCACTGGTCACCAGAGGACTTCGAATCGAAATTGCAGGAAGCAATGAAACAGACTTATCAGAGAGCTATCAAAGCTGCAACTGATTTTGGTTACCAAAAAGAAAGTCCTGAGGCTCTGGTGCATGGAGCAGTCATCTCTGCCTTTCTAACCATTGCTCAAGCCATGACTGATCAAGGTTCTGTATAG 1464 0.4242 MSKTAGSILEATLKRDPHEVEFIQAVQDAVQSLERVIAKNSRYVNIMERLLEPERIIVFRVSWVDDRGKTHVNRGFRVQFNQSMGPCRGGIRFHPSMNLSVAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMSEMYRYLGPDKDLPSEEIGVGTREMGYLFGQYRRLAGHFQSTCRSDNHDLRPLSQKFIVIVAATVDVKKIPLLPSFLMLGSFTGPRIFWSGSSLRPEATGYGLVFFAQIMLADMNKELKGLRCVVSGSGKIAMHVLDKLIAYGALPISVSDSRGYLVDEDGFDYMKIALLRDIKAQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFTCASQNEINQSDAINLVNSGCRILVEGSNMPCTPEAVQILRKASVLIAPAMAAGAGGVVAGELELNHECSLMHWSPEDFESKLQEAMKQTYQRAIKAATDFGYQKESPEALVHGAVISAFLTIAQAMTDQGSV 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02279 487 FunFam NADP-specific glutamate dehydrogenase 417 487 - -
Spst4g02279 487 SMART ELFV_dehydrog_3 239 485 IPR006096 GO:0006520|GO:0016491
Spst4g02279 487 Gene3D - 244 409 - -
Spst4g02279 487 FunFam Glutamate dehydrogenase 244 409 - -
Spst4g02279 487 Pfam Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 53 180 IPR006097 GO:0006520|GO:0016491
Spst4g02279 487 PANTHER NADP-SPECIFIC GLUTAMATE DEHYDROGENASE 1-RELATED 227 487 - -
Spst4g02279 487 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 238 485 IPR036291 -
Spst4g02279 487 PIRSF Glu_DH 20 202 IPR014362 GO:0016639
Spst4g02279 487 PIRSF Glu_DH 209 487 IPR014362 GO:0016639
Spst4g02279 487 Gene3D Leucine Dehydrogenase, chain A, domain 1 51 186 - -
Spst4g02279 487 FunFam Glutamate dehydrogenase 51 186 - -
Spst4g02279 487 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 7 188 IPR046346 -
Spst4g02279 487 Gene3D Glutamate Dehydrogenase, chain A, domain 3 7 50 - -
Spst4g02279 487 Pfam Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 238 485 IPR006096 GO:0006520|GO:0016491
Spst4g02279 487 Gene3D Glutamate Dehydrogenase, chain A, domain 3 416 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02279 Spst-Chr4 63592798 63601610 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02279 35 365 EF-hand Containing Proteins AT5G07440 25.680 2.99e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02279 K00262 - gmx:100788009 842.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02279 4 63592798 63601610 Spst4g02279 4 63592798 63601610 ECH