Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02276 ATGATGTTCGTCGAACACGAGAGAAAAAGAAGTGGGCCAGACACTCTCCTCGCCCCAAATATAAAACCCCAACACCAACGCCAGAAAACGCCTCAATTTGCATTCCTTTGCCCTTTCTACAAGCCAACATCTTTCCAGCAGCTCCTTCTTCCTCTCACTCTCTTCCTCCTCGATCCTCCTTCCACCATGATTACAGTAACTGTAAAATGGCAAAAGGAGATTTTCAAAGAAGTAGAAATTGACACTACCCAGTCTCCTTACGTTTTCAAATGCCAATTGTATGATTTGACCGGTGTGCCTCCTGAAAGACAAAAAATTATGGTCAAGGGTGGTCTTTTGAAGGATGATGCTGATTGGTCAACATTAGGAGTGAAAGAGGGTCAAAAGCTAATGATGATGGGTACCGCTGATGAAGTAGTGAAGTCTCCAGAGAAGGGGACAGTTTTTGTTGAAGATCTTCCTGAAGAAGAACAAGTAGTTGCTGTTGGACACACGGCTGGTCTTTTCAATTTGGGAAATACGTGTTATATGAACTCAACATTGCAATGCCTCCATTCGGTGCCTGAGTTGAAGTCAGCTTTGATTAAGTACTCACATTCAGGACGAAATAATGATGTCGATCAGTCTTCTCATATGTTGACCATTGCAACTCGGGACTTATTCAACGAGCTTGATAAAAGTGTCAAGCCTGTAGCACCAATGCAATTTTGGATGGTATTGCGGAAAAAATATCCTCAGTTTGGTCAGCTGCATAATGGAGTGTTCATGCAACAGGATGCTGAAGAGTGTTGGACACAACTTCTATACACACTCTCTCAGTCCCTCAGATCTCCTGGATCTAGTGATAACCCTGATGCAGTGAAGGCCCTATTTGGCATTGAACTTATTAGCAGGATTCATTGTCAAGAGAGTAATGAAGAAAGCTCGGAAACAGAGTCTGTTTATTCACTTAAATGCCACATATCGCAGGAGGTGAACCATTTACATGAAGGGATAAAACATGGTTTAAAATCAGACTTGGAAAAGGCTTCGCCTGTATTGGGCCGCAGCGCTACGTACTTGAAGGAATCACGCATCAATGCCCTACCAAGGTATTTGACTGTTCAGTTCGTCCGATTCTTTTGGAAGAGGGAATCCAACCAGAAGGCTAAGATATTACGGAAAGTGGATTATCCTCTGGAGTTGGATGTTTATGATTTTTGTTCAGATGATCTTCGTAAAAAACTGGAAGCTCCTAGACAGATTCTAAGAAACGAGGAAGGCAAAAAACTTGGTCTGAAAGTGAATGAGAAAAGTTCTGCTCAGAAGGAAAATGATGTAAAAATGTCCGATGCTGAGGGATCATCGAATGGAGAAGGGGAGCCATCTGTAGTTCCCATGAATGAGGACGGTGAAAAGGAAACACAGATGACAGGAATCTATGATTTGGTTGCCGTGTTAACCCACAAGGGTAGAAGTGCTGATTCAGGGCATTATGTTGGTTGGGTCAAGCAAGAAAATGGGAAATGGATCGAGTTTGACGATGACAATCCCAAACCAAAAGTGGAAGACGACATCACTAGACTATCGGGAGGAGGTGATTGGCATATGGCGTATATAATCATGTACAAGGCTCGTGTTGTATCTGTGTAA 1632 0.4277 MMFVEHERKRSGPDTLLAPNIKPQHQRQKTPQFAFLCPFYKPTSFQQLLLPLTLFLLDPPSTMITVTVKWQKEIFKEVEIDTTQSPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDADWSTLGVKEGQKLMMMGTADEVVKSPEKGTVFVEDLPEEEQVVAVGHTAGLFNLGNTCYMNSTLQCLHSVPELKSALIKYSHSGRNNDVDQSSHMLTIATRDLFNELDKSVKPVAPMQFWMVLRKKYPQFGQLHNGVFMQQDAEECWTQLLYTLSQSLRSPGSSDNPDAVKALFGIELISRIHCQESNEESSETESVYSLKCHISQEVNHLHEGIKHGLKSDLEKASPVLGRSATYLKESRINALPRYLTVQFVRFFWKRESNQKAKILRKVDYPLELDVYDFCSDDLRKKLEAPRQILRNEEGKKLGLKVNEKSSAQKENDVKMSDAEGSSNGEGEPSVVPMNEDGEKETQMTGIYDLVAVLTHKGRSADSGHYVGWVKQENGKWIEFDDDNPKPKVEDDITRLSGGGDWHMAYIIMYKARVVSV 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02276 543 Gene3D - 62 135 - -
Spst4g02276 543 SMART ubq_7 64 135 IPR000626 GO:0005515
Spst4g02276 543 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 474 492 IPR018200 GO:0004843|GO:0006511
Spst4g02276 543 MobiDBLite consensus disorder prediction 1 20 - -
Spst4g02276 543 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 167 182 IPR018200 GO:0004843|GO:0006511
Spst4g02276 543 CDD Peptidase_C19A 167 537 - -
Spst4g02276 543 SUPERFAMILY Ubiquitin-like 60 152 IPR029071 -
Spst4g02276 543 Pfam Ubiquitin family 66 135 IPR000626 GO:0005515
Spst4g02276 543 Gene3D Cysteine proteinases 160 542 - -
Spst4g02276 543 CDD Ubl_USP14_like 63 137 - -
Spst4g02276 543 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 62 541 IPR044635 GO:0004843|GO:0016579|GO:0043161
Spst4g02276 543 FunFam Ubiquitin carboxyl-terminal hydrolase 14 159 543 - -
Spst4g02276 543 Pfam Ubiquitin carboxyl-terminal hydrolase 167 536 IPR001394 GO:0004843|GO:0016579
Spst4g02276 543 ProSitePatterns Ubiquitin domain signature. 90 115 IPR019954 -
Spst4g02276 543 MobiDBLite consensus disorder prediction 426 443 - -
Spst4g02276 543 FunFam Ubiquitin carboxyl-terminal hydrolase 14 63 135 - -
Spst4g02276 543 ProSiteProfiles Ubiquitin domain profile. 64 133 IPR000626 GO:0005515
Spst4g02276 543 SUPERFAMILY Cysteine proteinases 164 537 IPR038765 -
Spst4g02276 543 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 166 539 IPR028889 -
Spst4g02276 543 MobiDBLite consensus disorder prediction 426 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02276 Spst-Chr4 63540460 63555863 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02276 K11843 - gmx:100787481 941.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02276 4 63540460 63555863 Spst4g02276 4 63540460 63555863 ECH