Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02259 ATGGCTCAGCCGCCTTTCGATCCGTACTACCTCTACCAACAAGATGATCGGAGCAACATCAACACGCTCTTCGTGTCGGGGCTACCGGACGATGTGAAGGCGCGTGAGATTCACAACCTCTTCCGCCGCCGCCCCGGATTCGACTCTTGCCAACTCAAGTACACCGGTCGCGCCAACCAGGTCGTAGCGTTTGCCACGTTTTTCAACCACCAATCAGCAATGGCAGCGATACACGCCTTGAATGGTGTGAAATTTGATCCTCAAACTGGATCCGTTTTACATATTGAACTTGCCAGGTCAAACTCTAGGAGAAAGCGAAAACCAGGTAATGGAGCCTACGTGGTTATAGATAAAAGGTCCAAAGGGGAGCCTGATGTTCAGGGATCATCAAGTGATGATGGTGACAGTGACCCTGATGAACCATCAGACAGTGACGGCAACCATGGTGATCTACCAATCATAGCAAGTGATGAAACGGCTGTTGCTTCTGACAACGCTATACCCTTGGAGCAACATCATAAAGGAAGTGCTGGAGGACTGTGTTCCACTCTCTTTATCGCAAATCTTGGCCCAAACTGCACTGAAGATGAATTGAAGCAGGCCTTTTCTGTATATTCTGGATTCAACATGGTCAAAATGCGCTCTAGAGGAGGAATGCCAGTTGCATTTGCTGATTTTGAGGAAATTGATCAAGCTGCTAAGGTCGTGGAGGAGCTTCAGGGAAGCTTGCTTCCATCATCAGATCGGGGTGGCATGCACATAGAATACGCGAGGTCTAAAATGAGGAAGCACTAG 795 0.4881 MAQPPFDPYYLYQQDDRSNINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRANQVVAFATFFNHQSAMAAIHALNGVKFDPQTGSVLHIELARSNSRRKRKPGNGAYVVIDKRSKGEPDVQGSSSDDGDSDPDEPSDSDGNHGDLPIIASDETAVASDNAIPLEQHHKGSAGGLCSTLFIANLGPNCTEDELKQAFSVYSGFNMVKMRSRGGMPVAFADFEEIDQAAKVVEELQGSLLPSSDRGGMHIEYARSKMRKH 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02259 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 100 IPR000504 GO:0003723
Spst4g02259 264 FunFam RNA-binding protein with multiple splicing 174 264 - -
Spst4g02259 264 MobiDBLite consensus disorder prediction 101 152 - -
Spst4g02259 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 245 IPR000504 GO:0003723
Spst4g02259 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 86 IPR000504 GO:0003723
Spst4g02259 264 Gene3D - 180 264 IPR012677 -
Spst4g02259 264 Gene3D - 17 108 IPR012677 -
Spst4g02259 264 SMART rrm1_1 22 93 IPR000504 GO:0003723
Spst4g02259 264 SMART rrm1_1 183 255 IPR000504 GO:0003723
Spst4g02259 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 259 IPR000504 GO:0003723
Spst4g02259 264 FunFam RNA-binding protein with multiple splicing 2 18 108 - -
Spst4g02259 264 SUPERFAMILY RNA-binding domain, RBD 21 244 IPR035979 GO:0003676
Spst4g02259 264 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 131 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02259 Spst-Chr4 63380720 63383747 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02259 - - gmx:100783764 468.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02259 4 63380720 63383747 Spst4g02259 4 63380720 63383747 ECH