Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02256 ATGGAGTTCCAAGAAACGGGTGTATCGCTGAGATCGAGCTTGACGTTTGGAGAGACGCTGTGTGCGGTGTTCATTCCGCTCGTAGGAATTGTTGAAGCTTTGATTTTTAGCTTAACTGGTTGCTTCAGTTTCCGTTCTCCGGCGAAGACGAAACCCTCTCCTGCTCCCTTCCACGACATTCTCGCTCTCGCCAAGGACTCTCCCTTTACTGTTAATGAAATTGAGGCGGTGCACGAGTTGTTCAAGAAGTTGAGTAACTTAATCATTGAAGATGGTCTCATACACAAGGAAGAACTCACTTTGGCACTGTTGAAGACCTCAACTGGGAACAATCTTTTCCTTGACAGGTTGTTTGATATTTTCGATGAAAAAAGAAATGGTGTTATTGAATTTGAGGAGTTTGTGCATGCTCTCGGTATCTTCCATCCTTGTACTCCTCTGGAAAAGAAAATTGACTTTGCTTTTAGAATGTATGACTTGAGACAGACTGGATATATTGAGCGAGAAGAAGTTAGGCAAATGGTTGTTGCCATTTTGTCAGAATGTGGTATGGATCTGGAAGATGAAATCCTTGATACCATTGTTGATAAGACATTTCAAGATGCTGATGCTGACAAAGATGATAAAATAAGCAAAGAAGAATGGAAGGCAGTTGTCATTCGACACCCAACACTCTTGACGCACATGACTCTCCCTCATCTGCGCGACATCACCACACTGTTTACCAGTTTTATTTTCAACACCGAAGTTGATGATTCTTACTGGCAGCATATTAATGGCGATCATAAACATTGA 795 0.4201 MEFQETGVSLRSSLTFGETLCAVFIPLVGIVEALIFSLTGCFSFRSPAKTKPSPAPFHDILALAKDSPFTVNEIEAVHELFKKLSNLIIEDGLIHKEELTLALLKTSTGNNLFLDRLFDIFDEKRNGVIEFEEFVHALGIFHPCTPLEKKIDFAFRMYDLRQTGYIEREEVRQMVVAILSECGMDLEDEILDTIVDKTFQDADADKDDKISKEEWKAVVIRHPTLLTHMTLPHLRDITTLFTSFIFNTEVDDSYWQHINGDHKH 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02256 264 ProSiteProfiles EF-hand calcium-binding domain profile. 146 181 IPR002048 GO:0005509
Spst4g02256 264 PANTHER CALCINEURIN B 40 252 IPR045198 GO:0005509|GO:0019722|GO:0019900
Spst4g02256 264 ProSitePatterns EF-hand calcium-binding domain. 203 215 IPR018247 -
Spst4g02256 264 CDD EFh 114 175 IPR002048 GO:0005509
Spst4g02256 264 ProSiteProfiles EF-hand calcium-binding domain profile. 190 225 IPR002048 GO:0005509
Spst4g02256 264 ProSiteProfiles EF-hand calcium-binding domain profile. 109 144 IPR002048 GO:0005509
Spst4g02256 264 Pfam EF-hand domain pair 149 214 IPR002048 GO:0005509
Spst4g02256 264 PRINTS Recoverin family signature 164 182 - -
Spst4g02256 264 PRINTS Recoverin family signature 117 138 - -
Spst4g02256 264 SUPERFAMILY EF-hand 63 243 IPR011992 -
Spst4g02256 264 Gene3D - 61 253 - -
Spst4g02256 264 FunFam calcineurin B-like protein 3 59 252 - -
Spst4g02256 264 Pfam EF hand 115 134 IPR002048 GO:0005509
Spst4g02256 264 SMART efh_1 194 222 IPR002048 GO:0005509
Spst4g02256 264 SMART efh_1 113 141 IPR002048 GO:0005509
Spst4g02256 264 SMART efh_1 150 178 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02256 Spst-Chr4 63362587 63365560 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02256 31 253 EF-hand Containing Proteins AT5G55990 51.121 3.55e-81 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02256 K06268 - gmx:100306023 415.616