Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02245 ATGTATCGATTAGCTCGTAAAGTAGCTTCTTCCTCCATTGCTTCTCCCTCCGCTAAGAACCTTGTATTTGGTAGTGTGTTGTCATGCAGAAATTTTGTGAGCAAGGATATCAACTTTGGGATTGGAGCTCGTGCTGCAATCCTTCAAGGTGTAACTCAGGTTGCTGATGCTGTGAAAGTCACCATGGGACCCAAGGGTCGCAATGTGATAATCGAGAGAAGCCGTGGGAATCCCAGGATCACGAAGGATGGTGTTACCGTGGCTAAAAGTATCAAATTTAAAGACAAGGCCAAAAATGTTGGTGCGGATCTTGTCAAGCAGGTGGCCAAGGCGACCAACACTGCTGCTGGAGACGGTACAACTTGTGCTACTGTTTTGACTCAGGCTATACTCACAGAAGGATGTAAATCAATTTCTGCTGGCGTAAATGTTATGGATTTACGTAATGGAATAAATAAGGCGGTTCATGCCGTAATCACCGACTTGAAAAGCAGAGCATTGATGATAAGTACACCAGAAGAGATAACCCAGGTTGGAACTATATCTGCGAATGGGGAGCGTGATATTGGAGAATTGATAGCAAGGGCAATGGAGAAAGTTGGGAAGGAAGGAGTCATTACTGTTGTTGATGGGAATACTTTGGATAATGAGTTGGAAGTGGTAGAAGGAATGAAGTTAACCAGAGGTTACATATCTCCTTATTTTATTACTGACGAGAAGAGCCGCAAATGTGAATTGGAAAACCCTTTTATTCTCATCCATGACAAGAAAATTTCAGACATGAATTCACTGCTGAAAATACTGGAGCTGGCTGTAACGAAAAAAAGACCACTCCTAGTTGTTGCTGAAGATGTGGAGAGTGATGCATTGGCTATGCTCATACTCAACAAGCATCACGCTGGGCTTAAGGTTTGTGCTGTAAAAGCTCCTGGTTTTGGGGATAGTAGAAGAGCAAATCTAGATGATCTTGCAACTCTTACTGGAGGAGAGGTCATCACAGAAGAGCGTGGTTTGTCTCTTGATAAAGTCCAACCAGAAATGCTTGGCACTGCAAAAAAGGTTACTGTCACCATTGATGACACTATTATTCTACATGGTGGTGGGGATAAGAAGGCCATTGAAGAGAGATGTGAACAGCTGAGGGCGGCTATGGAAAAGAGTTCTGCCATGTTTGACAAAGAAAAAACACAGGAACGCCTATCAAAACTATCTGGTGGTGTAGCTGTGTTCAAAGTTGGAGGGGCTAGTGAGGCTGAAGTTGGGGAAAGGAAAGATAGAGTAACAGACGCTTTAAATGCCACTAGAGCAGCTGTGGAAGAGGGAATTGTTCCAGGTGGTGGAGTCGCTCTCTTATATGCTACCAGAGCGTTGGATAACCTTCAAACTGAAAATGAAGATGAGAAAAGAGGAGTGCAGATTATTCAGAATGCACTCAAGGCACCTACATCTACAATAGCTTCAAATGCCGGTTTTGATGGTGCTTTGGTCCACAGCAAATTGTTGGAACAAGATGATCATAATTTAGGTTTTGATGCGGCTAAAGGTGTCTATGTTGATATGGTAAAGGCTGGAATAATAGATCCTCTTAAAGTTGTTAGAACAGCTTTGGTAGATGCTGCCAGTGTGTCATTGCTACTGACAACAACCGAGGCAGCTGTGGTGGATAATCCGCATGACAAAAATAAACCTCCCAGTCGGGTGCCAGATATGGATGATTTGGATCTCTAA 1728 0.4334 MYRLARKVASSSIASPSAKNLVFGSVLSCRNFVSKDINFGIGARAAILQGVTQVADAVKVTMGPKGRNVIIERSRGNPRITKDGVTVAKSIKFKDKAKNVGADLVKQVAKATNTAAGDGTTCATVLTQAILTEGCKSISAGVNVMDLRNGINKAVHAVITDLKSRALMISTPEEITQVGTISANGERDIGELIARAMEKVGKEGVITVVDGNTLDNELEVVEGMKLTRGYISPYFITDEKSRKCELENPFILIHDKKISDMNSLLKILELAVTKKRPLLVVAEDVESDALAMLILNKHHAGLKVCAVKAPGFGDSRRANLDDLATLTGGEVITEERGLSLDKVQPEMLGTAKKVTVTIDDTIILHGGGDKKAIEERCEQLRAAMEKSSAMFDKEKTQERLSKLSGGVAVFKVGGASEAEVGERKDRVTDALNATRAAVEEGIVPGGGVALLYATRALDNLQTENEDEKRGVQIIQNALKAPTSTIASNAGFDGALVHSKLLEQDDHNLGFDAAKGVYVDMVKAGIIDPLKVVRTALVDAASVSLLLTTTEAAVVDNPHDKNKPPSRVPDMDDLDL 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02245 575 NCBIfam chaperonin GroEL 34 558 IPR001844 GO:0042026|GO:0140662
Spst4g02245 575 Coils Coil 370 390 - -
Spst4g02245 575 ProSitePatterns Chaperonins cpn60 signature. 436 447 IPR018370 GO:0005524|GO:0006457
Spst4g02245 575 Gene3D - 168 441 IPR027410 -
Spst4g02245 575 Coils Coil 457 477 - -
Spst4g02245 575 Pfam TCP-1/cpn60 chaperonin family 54 555 IPR002423 GO:0005524
Spst4g02245 575 Gene3D GroEL 223 404 IPR027409 -
Spst4g02245 575 SUPERFAMILY GroEL apical domain-like 215 407 IPR027409 -
Spst4g02245 575 SUPERFAMILY GroEL-intermediate domain like 169 235 IPR027410 -
Spst4g02245 575 CDD GroEL 35 555 IPR001844 GO:0042026|GO:0140662
Spst4g02245 575 SUPERFAMILY GroEL equatorial domain-like 38 553 IPR027413 -
Spst4g02245 575 MobiDBLite consensus disorder prediction 555 575 - -
Spst4g02245 575 Hamap Chaperonin GroEL [groEL]. 33 573 IPR001844 GO:0042026|GO:0140662
Spst4g02245 575 Gene3D - 37 554 IPR027413 -
Spst4g02245 575 FunFam 60 kDa chaperonin 223 404 - -
Spst4g02245 575 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 34 564 IPR001844 GO:0042026|GO:0140662
Spst4g02245 575 PRINTS 60kDa chaperonin signature 114 141 IPR001844 GO:0042026|GO:0140662
Spst4g02245 575 PRINTS 60kDa chaperonin signature 299 322 IPR001844 GO:0042026|GO:0140662
Spst4g02245 575 PRINTS 60kDa chaperonin signature 58 84 IPR001844 GO:0042026|GO:0140662
Spst4g02245 575 PRINTS 60kDa chaperonin signature 381 406 IPR001844 GO:0042026|GO:0140662
Spst4g02245 575 PRINTS 60kDa chaperonin signature 429 450 IPR001844 GO:0042026|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02245 Spst-Chr4 63234148 63240193 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02245 K04077 - gmx:100778935 1041.57