Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02216 ATGTTTGGCCTCTTCGACAAGAGCCAGAAGATCAAGGGTACTGTGGTGTTGATGCCAAAGAATGTGTTGGACGTTAACGAGTTAAACGCAGTGAAGAATGGAGGTGTTGATGGTTTTGTCTCCGGTGTCTTCGACACCGTGACCGACGTAGCTGGTCAAGTAGTTGATTCTGCAACTGCCATCTTCTCCCGTAATGTCTCCTTCAAGTTGATCAGTGCAACCTCCACTGATGCAAAGGGAAACGGGAAAGTTGGAACGGAAAGTTATCTAGAGAAGCATATTCCGACGTTACCAACCTTGGGAAATAGACGAGATGCATTCAACATTCATTTTGAATGGGATTCTAGTTTTGGAATTCCAGGAGCATTTTACATCAGAAACTTTACGTATGATGAGTTCTTCCTCGTTAGTGTCACTCTTGAGGACATTCCGAATCACGGAAGCATTCATTTTGTTTGCAACTCGTGGGTGTACAACTTTAAAAACTACAAAAAGGATCGTATTTTCTTTGCCAATAATACATATCTTCCAAGTGCAACACCAGCTCCACTAGTTAAGTACAGGAAAGAAGAGTTGGAGGTTTTAAGAGGAGATGGAACTGGAGAACGCAAGGAATGGGAAAGGATCTATGATTATGATGTGTACAATGATTTGGGGAACCCAGATAGTGACAAAAATCTTGCTCGTCCAGTTCTTGGAGGCTCAAGCACCTATCCCTACCCTCGTAGGGTTAGAACTGGTCGAAAAGCCACCAAGAAAGATCCTAAAAGTGAGAGACCTGCAGGCGAGATTTATATGCCAAGAGATGAAAAATTCGGTCATTTGAAGTCCTCAGATTTCCTCACATATGGATTAAAATCCACTTCTCAAGAACTCTTACCTTCTCTTGAAAACGTTTTTGACTCAGATTTCACATGGAACGAGTTTGATAGCTTCCAAGAAGTGCGTGACTTGTTTGAAGGTGGAATTAAGCTACCAACAGGTGTACTTAGTGACATTAGTCCCTTACCAATCTTCAAGGAAATTTTCCGATCTGATGGTGAAAGTGTCCTTCAATTTCCACCACCTCATGTTGTCAAAGTTAATAAATCTGCATGGATGACTGATGATGAATTTGCAAGGGAGATGATTGCTGGTGTAAACCCAAACGTAATTCGTTGTCTTCAAGAGTTCCCACCACAAAGCAAGTTAGATCCCACTCTCTATGGTGATCAAACTAGCACCATAACAAAAGAAAAGTTGGAGATTAACATGGGTGGGGTCACAGTGGAAAAGGCACTTAGTGCAAAGAGATTATTCATATTAGATTATCAAGATGCATTCATTCCGTATTTGACGAGGATAAACAAACTACCTACTGCAAAAGCCTATGCCACCAGAACAATCCTATTCTTGAAAGATGATGGCACTTTGAAGCCACTTGTCATCGAATTAAGCAAGCCACATCCAAGTGGAGATAATTTGGGTCCTGTTAGCAAAGTGGTGTTGCCTGCAATTGATGGTGTTGATAGCACAATCTGGCTATTGGCCAAGGCTCATGTAATAGTAAATGACTCTGGTTATCATCAGCTCATGAGTCATTGGTTAAATACTCATGCAGTGATGGAGCCATTTGCCATAGCAACAAACAGACATCTCAGTGTGATTCACCCCATTTATAAACTTATTTACCCTCATTATCGTGATACCATAAATATCAACGCACTTGCTAGACAAAACCTGATTAATGCAGGTGGCACTATAGAGCAATCATTTTTGCCTGGACGGTATTCTATGGAGATGTCTTCAGCTGTTTACAAGAATTGGGTTTTCACCGACCAATCATTGCCAGCTGATCTCATCAAGAGAGGATTGGCAGTTGAGGATCCCTCTGCTCCTCATGGCCTTCGTCTTGTGATAGAGGACTATCCTTATGCTGTCGATGGACTTGAAATATGGGATGCTATCAAGACATGGGTCCAAGATTATGTCTCCTTGTATTATCCAACAGATGTGGCAGTTCAAAAAGATACTGAACTCCAAGCATGGTGGAAGGAAGCTGTAGAGAAGGGTCATGCTGACTTAAAAGATAAGCCTTGGTGGCCTAAAATGCAGACTCTTCAAGAGCTTATTGAATCATGTTCTACTATCATATGGATTGCTTCAGCTCTCCATGCAGCTGTTAATTTTGGACAATACCCTTATGGAGGTTTTATCCTGAACCGTCCAACTCTCAGCAGAAGGTTTATCCCAGAGCCAGGAACCAAAGAATATGATGAGATGGTGAAGAGTCCACAAACTGCTTATTTGAGAACCATCACATCAAAGCGTCAAACCATCATTGATCTTACAGTGATAGAGATTTTGTCAAGGCATGCTTCTGATGAGATCTATCTTGGGGAGAGAGATAATCCGAATTGGACATCAGATTCAAAGGCATTAGAAGCCTTCAAAAAGTTTGGAAGCAAGTTGACAGAAATTGAAGGAAAAATCACAGCAAGGAACAACAATTCAAGTATGAAAAACCGATGTGGACCAGTTGAACTTCCATACACATTACTCATTCCTTCAAGTAAGGCAGGGTTGACGTTCAGAGGAATTCCCAACAGTATCTCCATCTAA 2601 0.4148 MFGLFDKSQKIKGTVVLMPKNVLDVNELNAVKNGGVDGFVSGVFDTVTDVAGQVVDSATAIFSRNVSFKLISATSTDAKGNGKVGTESYLEKHIPTLPTLGNRRDAFNIHFEWDSSFGIPGAFYIRNFTYDEFFLVSVTLEDIPNHGSIHFVCNSWVYNFKNYKKDRIFFANNTYLPSATPAPLVKYRKEELEVLRGDGTGERKEWERIYDYDVYNDLGNPDSDKNLARPVLGGSSTYPYPRRVRTGRKATKKDPKSERPAGEIYMPRDEKFGHLKSSDFLTYGLKSTSQELLPSLENVFDSDFTWNEFDSFQEVRDLFEGGIKLPTGVLSDISPLPIFKEIFRSDGESVLQFPPPHVVKVNKSAWMTDDEFAREMIAGVNPNVIRCLQEFPPQSKLDPTLYGDQTSTITKEKLEINMGGVTVEKALSAKRLFILDYQDAFIPYLTRINKLPTAKAYATRTILFLKDDGTLKPLVIELSKPHPSGDNLGPVSKVVLPAIDGVDSTIWLLAKAHVIVNDSGYHQLMSHWLNTHAVMEPFAIATNRHLSVIHPIYKLIYPHYRDTININALARQNLINAGGTIEQSFLPGRYSMEMSSAVYKNWVFTDQSLPADLIKRGLAVEDPSAPHGLRLVIEDYPYAVDGLEIWDAIKTWVQDYVSLYYPTDVAVQKDTELQAWWKEAVEKGHADLKDKPWWPKMQTLQELIESCSTIIWIASALHAAVNFGQYPYGGFILNRPTLSRRFIPEPGTKEYDEMVKSPQTAYLRTITSKRQTIIDLTVIEILSRHASDEIYLGERDNPNWTSDSKALEAFKKFGSKLTEIEGKITARNNNSSMKNRCGPVELPYTLLIPSSKAGLTFRGIPNSISI 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02216 866 FunFam Lipoxygenase 501 865 - -
Spst4g02216 866 Pfam Lipoxygenase 184 849 IPR013819 GO:0016702|GO:0046872
Spst4g02216 866 Pfam PLAT/LH2 domain 75 170 IPR001024 GO:0005515
Spst4g02216 866 Gene3D - 365 499 - -
Spst4g02216 866 Gene3D - 276 364 IPR027433 -
Spst4g02216 866 FunFam Lipoxygenase 176 275 - -
Spst4g02216 866 PANTHER LIPOXYGENASE 8 866 IPR000907 GO:0016702|GO:0034440|GO:0046872
Spst4g02216 866 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 9 175 IPR036392 GO:0005515
Spst4g02216 866 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 174 866 IPR013819 GO:0016702|GO:0046872
Spst4g02216 866 SMART LH2_4 9 172 IPR001024 GO:0005515
Spst4g02216 866 Gene3D - 176 275 - -
Spst4g02216 866 SUPERFAMILY Lipoxigenase 176 866 IPR036226 -
Spst4g02216 866 Gene3D PLAT/LH2 domain 1 175 - -
Spst4g02216 866 PRINTS Plant lipoxygenase signature 779 793 IPR001246 GO:0016491
Spst4g02216 866 PRINTS Plant lipoxygenase signature 167 188 IPR001246 GO:0016491
Spst4g02216 866 PRINTS Plant lipoxygenase signature 351 367 IPR001246 GO:0016491
Spst4g02216 866 PRINTS Plant lipoxygenase signature 141 159 IPR001246 GO:0016491
Spst4g02216 866 PRINTS Plant lipoxygenase signature 390 409 IPR001246 GO:0016491
Spst4g02216 866 PRINTS Plant lipoxygenase signature 206 222 IPR001246 GO:0016491
Spst4g02216 866 PRINTS Plant lipoxygenase signature 239 258 IPR001246 GO:0016491
Spst4g02216 866 PRINTS Plant lipoxygenase signature 306 327 IPR001246 GO:0016491
Spst4g02216 866 PRINTS Plant lipoxygenase signature 457 481 IPR001246 GO:0016491
Spst4g02216 866 Gene3D - 500 865 - -
Spst4g02216 866 CDD PLAT_LH2 10 172 IPR042057 -
Spst4g02216 866 ProSitePatterns Lipoxygenases iron-binding region signature 2. 549 559 IPR020834 GO:0016702|GO:0046872
Spst4g02216 866 MobiDBLite consensus disorder prediction 242 262 - -
Spst4g02216 866 FunFam Lipoxygenase 365 499 - -
Spst4g02216 866 ProSitePatterns Lipoxygenases iron-binding region signature 1. 522 536 IPR020833 GO:0016702|GO:0046872
Spst4g02216 866 PRINTS Lipoxygenase signature 522 539 IPR013819 GO:0016702|GO:0046872
Spst4g02216 866 PRINTS Lipoxygenase signature 542 562 IPR013819 GO:0016702|GO:0046872
Spst4g02216 866 PRINTS Lipoxygenase signature 504 521 IPR013819 GO:0016702|GO:0046872
Spst4g02216 866 ProSiteProfiles PLAT domain profile. 43 171 IPR001024 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02216 Spst-Chr4 62895129 62899771 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02216 8 866 Acyl Lipid Metabolism Gene Families AT1G55020 56.028 0.0 1009
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02216 K15718 - gmx:100815477 1566.59