Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02214 ATGAGTTCAAAGGTGGAAGAGATGAAGTTGGTGAAGGGGAGGGTGGTGTTGATGCGGAAGAGTGTGATTGAAACCATAACCAGCGTCACGGGTCTAGTTAGCTCTGGCGTCAAGCTAATTGAATCAGCAGATGAATATGATATTACTAAATCTGTAATTTTCAAGTTGATTAGCCGCACCAAGTCATCCATTATTGGTGGCCCAGGGAAAGTTGGAAACGCTACCCGTTTACAGAATAATGTTTCTGTGTTACGAAACTTGGGGTCGATAGCGGAGGAATACGACATTTATTTTGACTGGAATGATGATGAGATGGGAATTCCAGGAGCATTCTACGTAACAAACCAGATGAAAGATGAGTTCTTCCTTGTTAGTATGACTCTTGAATATCCAGCTCCAACAAGCGACGAGGAGAAGAACAAAAGCAAGATTCACTTTGTGTGTAACTCGTGGGTTCACAATTATAAGTGTTACAAGACGGATCGCCTTTTCTTTGACAACATTCCACATCTTCCTGGGAATCAAACACCAGAGACATTACGAAAGTACAGAGAAGAAGAGTTGAAGAGTTTAAGGGGAGATGGAACTGGAGAGCGTCAGAAATGGGATAGGATTTATGACTATGATGTCTATAATGATTTGGGCTTTCTAGACAGCGATGGACCAGAGGATCACCCAATTCTTGGAGGCACTCGCTATCCCTACCCTCGTAGGGTTAGGACTGGGAGAAAACTTATCCACAATAACAACAATGGTGGTGAATACGAGACACAAGGCGAGGATTATTATGTGCCAAGAGATGAAAAATTCAGTCCAATGAAGACATCAGAGTTCCTTCAAAATGGAACGAAAATTTTAGCTGAAAGAGTCGAACCCTTGCTCCTATCTTTATATTTAAAAACCACAACAAACGAATTTAATGGCTTCGAAGAAGTGCAGAAACTGTATGAAGGTGGCGTTAATCTGCCTTTATCTATCAATGCCAACGGTACTCCAAATGTCCTCAAGTTCCCACCACCTCATGTAATCAAAGAAAGCAAGTTTGGATGGTTGACTGATGAAGAATTTGCAAGAGAGATGATTGCTGGTGTAAACCCTGGTGTAATTCGCATTTTTAAGTTTGAGGATCTTGGTCTACCAATTAACAACTCTAATCAAACGAGTACAATAACAGAAAAACACTTGGAGCTGAACATGGGTGGGCTCAAACTAGATGAGTATGGAGGCAGCCAAAGGGGTATTGGTGTGATTCAAAGGTATGAAATTATTAAGAAAGTGATCACTGAAGTTAAATTTTTGGAACAGGCATGCAGTTGTAACAGATTATTCGTTTTAGATTACCACGAAGCTTTCTTGCCGTATTTGAACAAGATAAACAACCTTCCTTCTGCAAAGGCTTATGCAACAAAGACATTCTTATACTTGAAAGATGACGGGACATTGAAGCCACTTGCTATTGTATTAAGCAAGCCAGGTGTCGAGAATAAAGTGGTCTTGCCCGCAGACAAAGGTGTTGAAAGTACAATCTGGCTATTGGCCAAGGCTCATGTTATTGTAAATGACTCAAACTATCATCAGCTCATAAGCCACTGGTATATATTTCTATATAGATGTACTCTTTCTGCTAGCAACATATGTTAA 1641 0.4046 MSSKVEEMKLVKGRVVLMRKSVIETITSVTGLVSSGVKLIESADEYDITKSVIFKLISRTKSSIIGGPGKVGNATRLQNNVSVLRNLGSIAEEYDIYFDWNDDEMGIPGAFYVTNQMKDEFFLVSMTLEYPAPTSDEEKNKSKIHFVCNSWVHNYKCYKTDRLFFDNIPHLPGNQTPETLRKYREEELKSLRGDGTGERQKWDRIYDYDVYNDLGFLDSDGPEDHPILGGTRYPYPRRVRTGRKLIHNNNNGGEYETQGEDYYVPRDEKFSPMKTSEFLQNGTKILAERVEPLLLSLYLKTTTNEFNGFEEVQKLYEGGVNLPLSINANGTPNVLKFPPPHVIKESKFGWLTDEEFAREMIAGVNPGVIRIFKFEDLGLPINNSNQTSTITEKHLELNMGGLKLDEYGGSQRGIGVIQRYEIIKKVITEVKFLEQACSCNRLFVLDYHEAFLPYLNKINNLPSAKAYATKTFLYLKDDGTLKPLAIVLSKPGVENKVVLPADKGVESTIWLLAKAHVIVNDSNYHQLISHWYIFLYRCTLSASNIC 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02214 546 Gene3D PLAT/LH2 domain 2 169 - -
Spst4g02214 546 SMART LH2_4 9 167 IPR001024 GO:0005515
Spst4g02214 546 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 11 168 IPR036392 GO:0005515
Spst4g02214 546 SUPERFAMILY Lipoxigenase 429 532 IPR036226 -
Spst4g02214 546 PANTHER LIPOXYGENASE 11 531 IPR000907 GO:0016702|GO:0034440|GO:0046872
Spst4g02214 546 PRINTS Plant lipoxygenase signature 467 491 IPR001246 GO:0016491
Spst4g02214 546 PRINTS Plant lipoxygenase signature 202 218 IPR001246 GO:0016491
Spst4g02214 546 PRINTS Plant lipoxygenase signature 234 253 IPR001246 GO:0016491
Spst4g02214 546 PRINTS Plant lipoxygenase signature 303 324 IPR001246 GO:0016491
Spst4g02214 546 PRINTS Plant lipoxygenase signature 136 154 IPR001246 GO:0016491
Spst4g02214 546 PRINTS Plant lipoxygenase signature 162 183 IPR001246 GO:0016491
Spst4g02214 546 Gene3D - 503 541 - -
Spst4g02214 546 Pfam Lipoxygenase 180 406 IPR013819 GO:0016702|GO:0046872
Spst4g02214 546 Pfam Lipoxygenase 421 532 IPR013819 GO:0016702|GO:0046872
Spst4g02214 546 Gene3D - 274 347 IPR027433 -
Spst4g02214 546 Gene3D - 348 502 - -
Spst4g02214 546 Gene3D - 171 273 - -
Spst4g02214 546 SUPERFAMILY Lipoxigenase 174 407 IPR036226 -
Spst4g02214 546 Pfam PLAT/LH2 domain 69 165 IPR001024 GO:0005515
Spst4g02214 546 ProSiteProfiles PLAT domain profile. 27 166 IPR001024 GO:0005515
Spst4g02214 546 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 170 546 IPR013819 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02214 Spst-Chr4 62889339 62891678 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02214 9 531 Acyl Lipid Metabolism Gene Families AT1G55020 39.421 2.21e-110 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02214 K15718 - gmx:100802685 634.024