Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02212 ATGCCGTATTTGAAGAAGATAAACTACCTTCCTTCTGCAAAGGCTTATGCCACCAGGACATTCTTGTTCTTGAAAGATGACGGGACTTTGAAGCCACTTGCGATTGAATTAAGCAAGCCACGTTTGATTAGAGATTGTGATTTGGGTTTTAAACCGGTGTTGCCATTGCCAGTCATCGATGTCCAGCCACATCCAGATATAAATTATCATTGGGGTGTTGAGAGCAAAGTTGTGTTGCCTGCAGACAAAGGTGTTGAAAGTACAATCTGGCTATTGGCCAAGGCCCATGTTATTGTCAATGACACCAACTATCATCAGCTCATAAGCCACTGGTTAAATACTCATGCAGTGATGGAGCCATTTGCCATAGCAACACACAGAAATCTCAGTGTGGTTCACCCCGTTTATAAACTTCTTCATCCTCACTACCGTGACACCATAAATATCAATGCACTTGCTAGGGAAATCCTGATTAATGCAGGTAGCATTGTAGAGCAAACGTTCTTGCCTGGACCGTATTCTATGGAGATGTCTTCAGCTGTATACAAGAATTGGGTTTTCACTGACCAAGCATTACCGAACGATCTCATCAAGAGGTAG 600 0.4283 MPYLKKINYLPSAKAYATRTFLFLKDDGTLKPLAIELSKPRLIRDCDLGFKPVLPLPVIDVQPHPDINYHWGVESKVVLPADKGVESTIWLLAKAHVIVNDTNYHQLISHWLNTHAVMEPFAIATHRNLSVVHPVYKLLHPHYRDTININALAREILINAGSIVEQTFLPGPYSMEMSSAVYKNWVFTDQALPNDLIKR 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02212 199 Gene3D - 1 49 - -
Spst4g02212 199 PANTHER LIPOXYGENASE 1 199 IPR000907 GO:0016702|GO:0034440|GO:0046872
Spst4g02212 199 Pfam Lipoxygenase 1 41 IPR013819 GO:0016702|GO:0046872
Spst4g02212 199 Pfam Lipoxygenase 72 199 IPR013819 GO:0016702|GO:0046872
Spst4g02212 199 SUPERFAMILY Lipoxigenase 1 199 IPR036226 -
Spst4g02212 199 Gene3D - 71 199 - -
Spst4g02212 199 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 1 199 IPR013819 GO:0016702|GO:0046872
Spst4g02212 199 ProSitePatterns Lipoxygenases iron-binding region signature 2. 132 142 IPR020834 GO:0016702|GO:0046872
Spst4g02212 199 PRINTS Lipoxygenase signature 87 104 IPR013819 GO:0016702|GO:0046872
Spst4g02212 199 PRINTS Lipoxygenase signature 105 122 IPR013819 GO:0016702|GO:0046872
Spst4g02212 199 PRINTS Lipoxygenase signature 125 145 IPR013819 GO:0016702|GO:0046872
Spst4g02212 199 ProSitePatterns Lipoxygenases iron-binding region signature 1. 105 119 IPR020833 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02212 Spst-Chr4 62873330 62874036 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02212 1 199 Acyl Lipid Metabolism Gene Families AT3G22400 56.784 1.25e-69 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02212 K15718 - gmx:100802685 298.13