Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02210 ATGGCTATTGAGGATTCATCTTCTCCCAATGGCCTCCGTCTGGTGATAAAGGACTACCCCTATGCTGTTGATGGATTAGAGATATGGAACGCTATCAAGACATGGGTCCATGACTATGTCTCGTTGTACTATATCACAGATGATGCAATTAAAAAAGATCTTGAACTCCAAGCATGGTGGAAAGAAGTTGTTGAGAAGGGTCATGCTGACTTAAAAGATAAGCCGTGGTGGCCTAAACTACACACTCGCGAAGAGCTTATTCAATCTTGTAGTACCATCATATGGATTGCTTCGGCTTTTCACGCAGCAGTTAATTTTGGACAATATCCTTATGGTGGCTTTATCCTCAATCGTCCAACTATAAGCAGAAGATTGATCCCAGAAAAAGGAACTCCAGAATATGAAGAGATGGCAAATAATGCTCAAAAGGCTTATTTGAGAACAATCACGCCAAAGTATCAGGCTCTTGTTGATCTTTCAGTGATAGAAATATTATCAAGACATGCTTCTGATGAGGTGTACCTCGGACAGAGGGACAATCCAAATTGGTCCTCTAATCCAAGGGCAATAGAAGCCTTTAAAAAGTTTGGAAATAGTCTAGCAGAGATTGAGACAAGAATCTCAGAAAGGAACAATGATCCAAATCTTAAAAATCGAACTGGGCCAGCTCAATTGCCCTATACTTTGCTTCTTCCTACCAGTGAAACGGGGTTGACTTTTAGAGGAATTCCCAACATTGCAGAAGATATAGAGAATCAAGTAAGATATATAAAAATGTTTACGAGGTTGAGAAGGTTGTGGAGCAGAAGCCACAAGGTGAAGGGGACGGTGGTGTTGATGAAGAAGAACGTGTTTGATTTCAACAACATAACGAGTGTGAGTGGGATTATTGGGACTGGAATCGACATTGTTGGCTCAGCAGTTGATGGTATCAGTGCCATAACTGGTAGCTCTGTCAGTATTCAGCTCATTAGTGCTACCAAGGCTGATTCTAATGGAAATGGGATAGTTGGAAGGAAGGCCTATTTGGAAGGTATTATTACCTCCACACCGACTTTGGGAGTTGAGCAATCTGCATTTGATGTTCAGTTCAAATGGGATGCTGACATGGGAATTCCTGGAGCATTTATCATAAGAAATAATATGCAAGTTGAGTTCTTCCTTGTCAGTTTGACTCTCGAAGACATTCCTAATAAAGGAACCATACACTTTGCTTGCAACTCATGGGTTTACAATCATAAAGATTATGAAGATGATCGAATTTTTTTTGCCAACGAGGCATACATTACAAGTAAAACACCAGGTCCACTAATGACGTACAGAGAAGCAGAATTGAAGAGCTTAAGAGGAAATGGAAGAGGGAAACGCAAGGAATGGGACAGAATTTATGATTATGATGTATACAATGATTTGGGCAATCCAGACTGCGGTAAAAACCTTGCTCGCCCTGTTCTTGGAGGATCTACCACTTATCCCTATCCTCGTAGGGGAAGAACTGGTCGAAAACCAACAAAGAAAGACCCCAAATGCGAGAAACCAGGCAAGGTGTATGTTCCAAGAGATGAAAATTTCGGTCACTTGAAGTCATCTGACTTCCTTTCTTTTGCGATTAAAGCTTTATCTCGTAATGTCTTACCTTTACTCAAATCTTTATTTGATTTAAACTTCACACCGAATGAGTTTGGTAGCTTCGAAGACGTACGTGAACTCTGTGAAGGTGGACTTAGGCTCCCTACAGATATACTTAGCCAAATTAGTCCCTTACCTGTGCTCAAGGAAATCTTCCGCACTGATGGTGAAATTAATGTCCTCAAGTTTTCTATACCTCATTTAATCAAAGCAGTTAATAAATCTGCATGGATGACTGATGAGGAATTTGCCAGAGAGATGCTTGCTGGTGTTAACCCTTGTGTGATTCGCTGTCTACAAGAGTTCCCACCACAGAGCAAGCTGGATCCCTCAGTGTATGGTGATCAAACCAGTAAAATGACTGAACAACACTTGGAGATAAACCTTGAAGGGTTAACAGCAATTGAAGGTCAGAGACTATTCATATTAGATCACCATGACCTATTTATGCAATTTTTGGGAAGGCTAAATGCATCCAAATCAACAAAAGCTTATGCCACGAGGACAATCCTTTTCTTGAAAGATGATGGAACCTTGAAGCCATTAGCCATCGAATTAAGTTTACCACATTCAGGTGGACAAAAACTTGGTGCCCATAGTAAAGTCATCTTGCCTGCAAGTGAAGGGGTGGAAGGTACAATTTGGCTGTTGGCTAAGGCATATGTTGTGGTGAATGATTCATGCTATCATCAGCTCATAAGCCACTGGTTGAATACTCATGCTGTGATTGAGCCCTTTATCATTGCAACAAACAGGAATCTCAGTGTTCTTCATCCTGTTTATAAGCTTTTATTTCCTCACTATCGTGACACAATGAATATCAATGCACTTGCTCGACAATCTCTAATTAATGCTGATGGCATCATAGAGCAATCCTTTTTGGGTGAAAAGTACGTTATGGAGATATCTTCAGCAGCATACAAAGATTGGGTGTTCCCTGACCAAGCATTACCAGATGATCTTATCAAGAGGTAA 2604 0.4067 MAIEDSSSPNGLRLVIKDYPYAVDGLEIWNAIKTWVHDYVSLYYITDDAIKKDLELQAWWKEVVEKGHADLKDKPWWPKLHTREELIQSCSTIIWIASAFHAAVNFGQYPYGGFILNRPTISRRLIPEKGTPEYEEMANNAQKAYLRTITPKYQALVDLSVIEILSRHASDEVYLGQRDNPNWSSNPRAIEAFKKFGNSLAEIETRISERNNDPNLKNRTGPAQLPYTLLLPTSETGLTFRGIPNIAEDIENQVRYIKMFTRLRRLWSRSHKVKGTVVLMKKNVFDFNNITSVSGIIGTGIDIVGSAVDGISAITGSSVSIQLISATKADSNGNGIVGRKAYLEGIITSTPTLGVEQSAFDVQFKWDADMGIPGAFIIRNNMQVEFFLVSLTLEDIPNKGTIHFACNSWVYNHKDYEDDRIFFANEAYITSKTPGPLMTYREAELKSLRGNGRGKRKEWDRIYDYDVYNDLGNPDCGKNLARPVLGGSTTYPYPRRGRTGRKPTKKDPKCEKPGKVYVPRDENFGHLKSSDFLSFAIKALSRNVLPLLKSLFDLNFTPNEFGSFEDVRELCEGGLRLPTDILSQISPLPVLKEIFRTDGEINVLKFSIPHLIKAVNKSAWMTDEEFAREMLAGVNPCVIRCLQEFPPQSKLDPSVYGDQTSKMTEQHLEINLEGLTAIEGQRLFILDHHDLFMQFLGRLNASKSTKAYATRTILFLKDDGTLKPLAIELSLPHSGGQKLGAHSKVILPASEGVEGTIWLLAKAYVVVNDSCYHQLISHWLNTHAVIEPFIIATNRNLSVLHPVYKLLFPHYRDTMNINALARQSLINADGIIEQSFLGEKYVMEISSAAYKDWVFPDQALPDDLIKR 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02210 867 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 427 867 IPR013819 GO:0016702|GO:0046872
Spst4g02210 867 PANTHER LIPOXYGENASE 271 867 IPR000907 GO:0016702|GO:0034440|GO:0046872
Spst4g02210 867 Gene3D - 528 618 IPR027433 -
Spst4g02210 867 Gene3D - 747 867 - -
Spst4g02210 867 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 1 249 IPR013819 GO:0016702|GO:0046872
Spst4g02210 867 SMART LH2_4 271 425 IPR001024 GO:0005515
Spst4g02210 867 FunFam Lipoxygenase 429 527 - -
Spst4g02210 867 Gene3D PLAT/LH2 domain 263 428 - -
Spst4g02210 867 Gene3D - 429 527 - -
Spst4g02210 867 PRINTS Plant lipoxygenase signature 492 511 IPR001246 GO:0016491
Spst4g02210 867 PRINTS Plant lipoxygenase signature 459 475 IPR001246 GO:0016491
Spst4g02210 867 PRINTS Plant lipoxygenase signature 420 441 IPR001246 GO:0016491
Spst4g02210 867 PRINTS Plant lipoxygenase signature 644 663 IPR001246 GO:0016491
Spst4g02210 867 PRINTS Plant lipoxygenase signature 394 412 IPR001246 GO:0016491
Spst4g02210 867 PRINTS Plant lipoxygenase signature 708 732 IPR001246 GO:0016491
Spst4g02210 867 PRINTS Plant lipoxygenase signature 558 579 IPR001246 GO:0016491
Spst4g02210 867 Gene3D - 1 247 - -
Spst4g02210 867 ProSitePatterns Lipoxygenases iron-binding region signature 1. 773 787 IPR020833 GO:0016702|GO:0046872
Spst4g02210 867 ProSiteProfiles PLAT domain profile. 297 424 IPR001024 GO:0005515
Spst4g02210 867 ProSitePatterns Lipoxygenases iron-binding region signature 2. 800 810 IPR020834 GO:0016702|GO:0046872
Spst4g02210 867 Pfam Lipoxygenase 1 232 IPR013819 GO:0016702|GO:0046872
Spst4g02210 867 Pfam Lipoxygenase 437 867 IPR013819 GO:0016702|GO:0046872
Spst4g02210 867 SUPERFAMILY Lipoxigenase 1 245 IPR036226 -
Spst4g02210 867 CDD PLAT_LH2 271 425 IPR042057 -
Spst4g02210 867 FunFam Lipoxygenase 619 750 - -
Spst4g02210 867 Pfam PLAT/LH2 domain 327 423 IPR001024 GO:0005515
Spst4g02210 867 Gene3D - 619 746 - -
Spst4g02210 867 MobiDBLite consensus disorder prediction 487 512 - -
Spst4g02210 867 SUPERFAMILY Lipoxigenase 431 867 IPR036226 -
Spst4g02210 867 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 271 428 IPR036392 GO:0005515
Spst4g02210 867 PRINTS Lipoxygenase signature 755 772 IPR013819 GO:0016702|GO:0046872
Spst4g02210 867 PRINTS Lipoxygenase signature 793 813 IPR013819 GO:0016702|GO:0046872
Spst4g02210 867 PRINTS Lipoxygenase signature 773 790 IPR013819 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02210 Spst-Chr4 62851134 62858906 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02210 259 867 Acyl Lipid Metabolism Gene Families AT1G55020 56.101 0.0 666
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02210 K15718 - gmx:547694 971.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00300 5 2595767 2599632 Spst4g02210 4 62851134 62858906 PCT