Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02209 ATGAAGCTGAAGGGAACGGTGGTGTTGATGCGTAAGAATGTGCTGGATATCAACGCCCTTAAATATGCTAAAAGTGCCACCGGTTTCGTCGGCGGCGCCATCGGTGTTGTGGGTGGTTTGATGGGAACAACGGTTGACACTCTGACTTCCTTTGTTGGACGATCTGTGGCTCTCTGGTTGATCAGTGCCACCGCTGCTGATGGAAATGGAAATGGAAAAGTGGGAAAGAAGACATATTTGGAAGGAATTATTACCTCGATACCAACTTTGGGAGCTGGCCAATCTGCATTTGATATTCATTTTGAATGGGAGAGTGACATGGGAATTCCTGGAGCATTTTTAATACAAAATCATATGCAAGTTGAGTTCTTCCTCGTCAGTTTAACTCTTGAAGATATTCCTAATCATGGAACAATGCACTTTGCCTGTAACTCATGGGTTTACAATTATAAAAGTTACGAAAAGGATCGAATTTTCTTTGCCAACGAGACATATGTTCCAAGTGAAACACCAGGTCCACTAGTTACTTACAGAGAAGCAGAATTGCTGGTTCTAAAAGGAAATGGAACAGGAAAGCGCAAGGAATGGGATAGAGTTTATGATTACGATGTTTACAATGATTTGGGCAAACCCGACAATGGTGAAGACTTTGCTCGCCCAGTTCTTGGAGGATCTGTCACTTATCCCTACCCTCGTAGAGGAAGAACAGGAGGAAAGCCAACAAAAAAGGATTCCAACTGTGAGAAACCGAGCGATGATGTTTATGTTCCAAGAGATGAAAATTTTGGTCATTTGAAGTCATCTGACTTCCTTACTTATGGGATCAAAGCTTTATCTCGAAACTTTTTGCCGACGCTCAAATCTGCATTCGATTTAAATTTCACACAAAATGAGTTTGATAGCTTCGACGAAGTACGTGCTCTATGTGAAGGTGGAATCAAGCTGCCTACAGATGTACTCTGCAAAATTAGCCCCTTACCTGTGCTCAAAGAAATATTCCGCACTGATGGTGAAAAAGTCCTCAAGTTTTCAGTACCTCATGTAATTAGAGTTAGTAAATCTGCATGGATGACTGATGAAGAGTTTGCAAGAGAAATGATTGCAGGTGTAAACCCTTGCGAGATTCGCCGTCTACAAAAGTTTCCACCACAAAGCAAGTTGGATCCCAAAGTGTACGGTGATCAAACAAGTAAAATGACTGCACAACACTTGGAGACTAACCTTGAAGGGCTCACAGTAGATAAGGCAATGATAAATGCAATTGAATATAAGAGACTATTCATATTAGATCACCATGACGTGTTTATGCCGTTTTTGAGAAGGTTAAACGAATCCAAATCAATAAAAGCTTATGCCACGAGGACAATCCTTTTCTTGAAAGATGATGGAACCTTAAAGCCATTGGCCATCGAATTAAGTTTGCCACATTCAGGTGAACAACAACCTGGTGCTGATAGTAGAGTGATCCTTCCTGCAAACCATGGAGTTGAAAGTACAATTTGGCTATTAGCCAAGGCTCATGAAATGATTCCTAATCCTTTTTTATATAAATGGGGTCACAGGTTGAATACTCATGCTGTGATTGAACCCTTTGTCATAGCAACAAACAGGAATCTCAGTGTTCTTCACCCTGTGTATAAACTTCTATTTCCTCACTATCGTGACACAATGCATATCAATGCACTTGCTCGACAATCACTAATTAATGCTAAGGGCGTTATAGAGCAATCCTTTTTGGGTGGAAAGTATTGTATGGAGATCTCTTCAGCAGCTTACAAAAAATGGGTGTTTCCTCACCAAGCATTACCTACTGATCTTATCAAGAGGTAA 1830 0.4082 MKLKGTVVLMRKNVLDINALKYAKSATGFVGGAIGVVGGLMGTTVDTLTSFVGRSVALWLISATAADGNGNGKVGKKTYLEGIITSIPTLGAGQSAFDIHFEWESDMGIPGAFLIQNHMQVEFFLVSLTLEDIPNHGTMHFACNSWVYNYKSYEKDRIFFANETYVPSETPGPLVTYREAELLVLKGNGTGKRKEWDRVYDYDVYNDLGKPDNGEDFARPVLGGSVTYPYPRRGRTGGKPTKKDSNCEKPSDDVYVPRDENFGHLKSSDFLTYGIKALSRNFLPTLKSAFDLNFTQNEFDSFDEVRALCEGGIKLPTDVLCKISPLPVLKEIFRTDGEKVLKFSVPHVIRVSKSAWMTDEEFAREMIAGVNPCEIRRLQKFPPQSKLDPKVYGDQTSKMTAQHLETNLEGLTVDKAMINAIEYKRLFILDHHDVFMPFLRRLNESKSIKAYATRTILFLKDDGTLKPLAIELSLPHSGEQQPGADSRVILPANHGVESTIWLLAKAHEMIPNPFLYKWGHRLNTHAVIEPFVIATNRNLSVLHPVYKLLFPHYRDTMHINALARQSLINAKGVIEQSFLGGKYCMEISSAAYKKWVFPHQALPTDLIKR 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02209 609 Gene3D - 266 354 IPR027433 -
Spst4g02209 609 ProSiteProfiles PLAT domain profile. 30 161 IPR001024 GO:0005515
Spst4g02209 609 Gene3D - 490 609 - -
Spst4g02209 609 Gene3D - 166 265 - -
Spst4g02209 609 CDD PLAT_LH2 1 162 IPR042057 -
Spst4g02209 609 SUPERFAMILY Lipoxigenase 167 609 IPR036226 -
Spst4g02209 609 Gene3D PLAT/LH2 domain 1 165 - -
Spst4g02209 609 PRINTS Plant lipoxygenase signature 131 149 IPR001246 GO:0016491
Spst4g02209 609 PRINTS Plant lipoxygenase signature 229 248 IPR001246 GO:0016491
Spst4g02209 609 PRINTS Plant lipoxygenase signature 341 357 IPR001246 GO:0016491
Spst4g02209 609 PRINTS Plant lipoxygenase signature 157 178 IPR001246 GO:0016491
Spst4g02209 609 PRINTS Plant lipoxygenase signature 196 212 IPR001246 GO:0016491
Spst4g02209 609 PRINTS Plant lipoxygenase signature 296 317 IPR001246 GO:0016491
Spst4g02209 609 PRINTS Plant lipoxygenase signature 380 399 IPR001246 GO:0016491
Spst4g02209 609 PRINTS Plant lipoxygenase signature 451 475 IPR001246 GO:0016491
Spst4g02209 609 FunFam Lipoxygenase 355 493 - -
Spst4g02209 609 Gene3D - 355 489 - -
Spst4g02209 609 PRINTS Lipoxygenase signature 535 555 IPR013819 GO:0016702|GO:0046872
Spst4g02209 609 PRINTS Lipoxygenase signature 498 515 IPR013819 GO:0016702|GO:0046872
Spst4g02209 609 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 164 609 IPR013819 GO:0016702|GO:0046872
Spst4g02209 609 MobiDBLite consensus disorder prediction 228 249 - -
Spst4g02209 609 Pfam PLAT/LH2 domain 69 160 IPR001024 GO:0005515
Spst4g02209 609 PANTHER LIPOXYGENASE 2 609 IPR000907 GO:0016702|GO:0034440|GO:0046872
Spst4g02209 609 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 2 165 IPR036392 GO:0005515
Spst4g02209 609 SMART LH2_4 1 162 IPR001024 GO:0005515
Spst4g02209 609 ProSitePatterns Lipoxygenases iron-binding region signature 2. 542 552 IPR020834 GO:0016702|GO:0046872
Spst4g02209 609 Pfam Lipoxygenase 174 609 IPR013819 GO:0016702|GO:0046872
Spst4g02209 609 FunFam Lipoxygenase 166 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02209 Spst-Chr4 62846786 62850867 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02209 2 609 Acyl Lipid Metabolism Gene Families AT1G55020 53.577 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02209 K15718 - gmx:547694 968.378