Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02208 ATGGCATCTCATTTACTCAATCATTCCGCCAAGATGAGAAATGCTTCAAAGTTACTGCACCGCGAGCGCGCTCTCTTGATTCGTTGGTTTTCCGGCGATGCTCAATCCTCTCTCCACCGGAACCGCGATGTGTGGAAAACTAAGTTCCTTGAGTCTTCAACAAGAAGCAGTGTCTTTGAACCGGCCTCCGGCTTTAATAAACATTCATTTGGTACGCAGAAGAGAAACATGTCCATGGCTAGCATCAAACGGAGTTCCATGATAGAGATTTCACAAGCTACCTCTACTAGTCTGTGGCCAGAGTTTCTACTCACTAGTGACCTTGACTTTGGATTGAGCTCTGAGGCTGTCACTCAATCACCTGATATGGGTAACATTGCGAGATGGTTGAAGAAAGAAGGTGATAAAGTCTCTCCTGGTGAAGTGCTCTGTGAAGTTGAAACTGATAAAGCTACTGTTGAAATGGAAAGTATGGAAGAAGGTTATCTGGCCAAGATAATCCGAGGAGATGGGCAAAAAGAAATTAAAGTTGGTGAGGTAATCGCCATAACTGTTGAAGATGAGGGGGATATTGCAAAGTTTAAAGATTACAAACCTTCAGCATCTGAATCAAGTGCGCCTGCTGCCACAGAAACATCTGCCCCATCCCCACCAAGGAAAGAGGTGGTGGAGGAGCCTGCCCGAGAACCTGAGCCAAAGGTTTCCAAACCTAGTGCACCACCGTCATCTGGAGATCGTATATTTGCTAGTCCTCTTGCTAGAAAGTTGGCTGAAGAGAAAAATGTACCTCTCTCTAGCATTAAAGGAACAGGACATGAAGGACTCATTGTGAAGGCTGACATTGAAGATTTCTTGGCTTCTGGTGCTAAAGAAGTTTCGGCCCCCTCAAAGGCCAAGGGTGCAACAGATGCAGCTTTGGATTATACCGACATTCCTGTCTCTCAGATACGGAAGGTCACTGCTTCACGGCTATTATTATCAAAACAAACTATTCCTCATTACTATTTAACAGTGGATGCATGTGTTGATAAACTCATGAGTTTACGGACCAAACTCAATTCATTACAAGAAGCCTCTGGTGGATCCCGCATATCAGTTAATGACCTTATAATCAAGGCTGCTGCTTTGGCTCTCCGTAAAGTTCCTCAATGTAACAGTTCATGGGCAAATGATTATATTCGCCAGTATAATAATGTGAACATTAATGTGGCTGTGCAGACTGATAATGGACTCTTTGTTCCAGTCATCAGGGATGCGGACAAGAAAGGCCTCTCTACAATAGGGGAGGAGGTCAAACAATTGGCAAAGAAAGCCAAAGAAAACAGCTTAAAACCCCAAGATTATGAGGGAGGTACGTTTACAGTGTCTAACCTGGGAGGGCCGTTTGGTGTCAAACAATTCTGTGCAATCATCAATCCTCCTCAGTCGGGCATTCTAGCAGTTGGATCTGCTGAGAGGAGGGTCATTCCGGGATCAGGTGCTGAAGAATTCAAGTTTGCTTCTTTTATGTCTGTGACCCTCAGCTGTGATCATCGTGTTATAGATGGTGCAATCGGTGCCGAATGGTTAAAAGCATTCAAAGGTTATATTGAAAATCCAGAATCTATATTGTTGTAA 1617 0.4409 MASHLLNHSAKMRNASKLLHRERALLIRWFSGDAQSSLHRNRDVWKTKFLESSTRSSVFEPASGFNKHSFGTQKRNMSMASIKRSSMIEISQATSTSLWPEFLLTSDLDFGLSSEAVTQSPDMGNIARWLKKEGDKVSPGEVLCEVETDKATVEMESMEEGYLAKIIRGDGQKEIKVGEVIAITVEDEGDIAKFKDYKPSASESSAPAATETSAPSPPRKEVVEEPAREPEPKVSKPSAPPSSGDRIFASPLARKLAEEKNVPLSSIKGTGHEGLIVKADIEDFLASGAKEVSAPSKAKGATDAALDYTDIPVSQIRKVTASRLLLSKQTIPHYYLTVDACVDKLMSLRTKLNSLQEASGGSRISVNDLIIKAAALALRKVPQCNSSWANDYIRQYNNVNINVAVQTDNGLFVPVIRDADKKGLSTIGEEVKQLAKKAKENSLKPQDYEGGTFTVSNLGGPFGVKQFCAIINPPQSGILAVGSAERRVIPGSGAEEFKFASFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESILL 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02208 538 FunFam Acetyltransferase component of pyruvate dehydrogenase complex 293 536 - -
Spst4g02208 538 ProSiteProfiles Peripheral subunit-binding (PSBD) domain profile. 248 285 IPR004167 GO:0016746
Spst4g02208 538 SUPERFAMILY CoA-dependent acyltransferases 307 538 - -
Spst4g02208 538 Pfam Biotin-requiring enzyme 119 183 IPR000089 -
Spst4g02208 538 FunFam Acetyltransferase component of pyruvate dehydrogenase complex 112 209 - -
Spst4g02208 538 CDD lipoyl_domain 120 183 - -
Spst4g02208 538 MobiDBLite consensus disorder prediction 198 247 - -
Spst4g02208 538 Pfam e3 binding domain 247 282 IPR004167 GO:0016746
Spst4g02208 538 Gene3D - 291 536 IPR023213 -
Spst4g02208 538 SUPERFAMILY Single hybrid motif 119 203 IPR011053 -
Spst4g02208 538 Gene3D - 114 210 - -
Spst4g02208 538 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 134 163 IPR003016 -
Spst4g02208 538 PANTHER DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED 85 538 IPR045257 GO:0006086|GO:0045254
Spst4g02208 538 ProSiteProfiles Biotinyl/lipoyl domain profile. 107 185 IPR000089 -
Spst4g02208 538 NCBIfam pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 121 538 IPR006257 GO:0004742|GO:0006090|GO:0045254
Spst4g02208 538 SUPERFAMILY Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 241 286 IPR036625 GO:0016746
Spst4g02208 538 Gene3D - 236 289 IPR036625 GO:0016746
Spst4g02208 538 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 307 538 IPR001078 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02208 Spst-Chr4 62808212 62815323 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02208 2 538 Acyl Lipid Metabolism Gene Families AT1G54220 64.273 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02208 K00627 - gmx:100804938 848.966