Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02183 ATGTTTGGGGTCAAAGAACATGGGCTTTGTTCTTCCTTAGCCGCTGCTTCCACCGTCCTCTCCCTTGAGTTTCAGCATAAACTACTGATCTATCTCCCTATCACCCTCTTTTACACAGTAAGAGAATCCTATTTTCGTTACATCAATATGTTTAGTTCATCAGGCATGGCGGAGGAAACTGGTATGTTCAAGGTTCATCAAACAATTGGCAGTGTTTTGTGTTGCAAGTGTGGAATTCCTATGCAGCCAAATGCTGCTAATATGTGTGTGAAGTGTTTGTGTTCGGAAGTTGATATAACAGAAGGGTTACTGAAGCGGCTAGTGCTGGTACATTGTCCTGAGTGTGAGAGCTACTTGCAGCCACCAAGAAGTTGGGTCAAGCTACAGCTAGAATCAAAAGAGCTGCTGACATTTTGTTTGAAGAAATTGCATAAGAATTTGAATTCAAGTAAAGCGAGGTTGATACATGCCGAGTTTATTTGGACTGAACCCCATTCAAGGAGGATAAAAGTCAAGGTCAAGGTTCAGAAGGAGGTTATCAACGGAGCAATTCTTGAACAGTCTTATACTGTGGAGTATGTTCAACAAGAGCATATGTGTGAATCCTGTTCTAGGGTCCAGGCTAATCCTGACCAGTGGGTTGCTGCTGTGCAACTCAGGCAACATGTTTCTCACAGGCGTACTTTCTTTTATTTAGAGCAGCTAATTCTGAAGCACGGAGCTGCTGCTAGTGCTATAAGAATCAAGCAGATGGAACAAGGTATTGACTTCTTTTTCTCCAATAGAAGTCACGGAGTTAAATTTGTGGAGTTTATAGGGAAAGTTGCTCCTGTAAGGAGTCGTAGTGATAAGCAGCTAGTTTCCCATGATCCTAAGAGTAATAACTACAACTACAAATATACATTTTCTGTTGAAATCAGCCCCATTTGTCGTGAGGATATAATCTGTCTGCCTCCAAAAGTTGCTGTTAGTTTGGGAAATATTGGTCCTATTGTGATTTGCACCAAGGTTACCAACAGCATTGCTCTGCTTGATCCATTTACCCTGAGGCACTGTTTCTTAGATGCTGATCAGTACTGGAGAACATCCTTCAAGTCGTTACTTACTAGCCGACAGTTGGTGGAATATATAGTGCTGGATGTGGAGGTTGTTTCGTCTGAGGTTACTATTGGTGGCACAAAATATCATTTAGCAGATGCTCAAGTTGCTCGTGTGTCAGATTTTGGTAAGAACGACACAATATTTAGTATCAGGACTCATCTGGGCCATCTTTTAAATCCTGGTGATTATGCTCTTGGTTATGATCTATACGGGGCTAATAGTAATGACATGGAGTTGGACAAGTACAAAGGGCACATTCCTGAAGCAATTTTAATAAAGAAAAGTTATGAAGAGAAACGCCAAAAGAAACGTGGGAAGCCTCGTTCATGGAAGCTTAAATCACTTGAAATGGAGGTTGATGATAGGAGAGTTGATCAAGACAAAATGGTCTCAGAATATGAACAGTTCTTGAAAGATCTGGAAGAAAACCCTGACATGAGGTTCAACATATCATTATACCGAAACAAGGAGTACCAGCCATCAGAGATGGCATCGGTGACTGATGGTGATGAGCTACCCTCTGTTCCCTTGGATGAATTGTTGGCTGATCTTGATCTGAGTGAAGCTGAAGATGAAGAGGATAACATGACAGAATGA 1698 0.4152 MFGVKEHGLCSSLAAASTVLSLEFQHKLLIYLPITLFYTVRESYFRYINMFSSSGMAEETGMFKVHQTIGSVLCCKCGIPMQPNAANMCVKCLCSEVDITEGLLKRLVLVHCPECESYLQPPRSWVKLQLESKELLTFCLKKLHKNLNSSKARLIHAEFIWTEPHSRRIKVKVKVQKEVINGAILEQSYTVEYVQQEHMCESCSRVQANPDQWVAAVQLRQHVSHRRTFFYLEQLILKHGAAASAIRIKQMEQGIDFFFSNRSHGVKFVEFIGKVAPVRSRSDKQLVSHDPKSNNYNYKYTFSVEISPICREDIICLPPKVAVSLGNIGPIVICTKVTNSIALLDPFTLRHCFLDADQYWRTSFKSLLTSRQLVEYIVLDVEVVSSEVTIGGTKYHLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYGANSNDMELDKYKGHIPEAILIKKSYEEKRQKKRGKPRSWKLKSLEMEVDDRRVDQDKMVSEYEQFLKDLEENPDMRFNISLYRNKEYQPSEMASVTDGDELPSVPLDELLADLDLSEAEDEEDNMTE 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02183 565 PANTHER NONSENSE-MEDIATED MRNA DECAY PROTEIN 3 66 557 IPR039768 GO:0043023
Spst4g02183 565 Pfam NMD3 family 74 306 IPR007064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02183 Spst-Chr4 62577318 62579582 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02183 K07562 - gmx:100799026 929.472