Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02179 ATGAGTTTTCTGTTCGGCAAGAGAAAGACCCCGGCTGAGCTTTTGAGGGAGAACAAAAGGATGCTGGACAAGTCCATTAGAGAAATAGAGAGGGAAAGGCAAGGCTTGCAGAATCAAGAAAAGAAGTTGATTGTCGAGATTAAGAAGAGCGCCAAACAAGGACAGATGGGGGCAGTGAGAGTGATGGCCAAGGATCTCATCAGGACTCGCCATCAGATTGAAAAGTTTTACAAGCTTAAATCCCAACTTCAGGGAGTTTCTTTGAGAATTCAGACACTAAAATCCACTCAAGCAATGGGGGAGGCTATGAAAGGAGTTACTAAAGCAATGGGTCAAATGAATAGGCAGATGAACTTGCCTTCCTTACAGAGGATAATGCAAGAGTTTGAAAGGCAGAATGAGAAGATGGAACTGGTTTCTGAGGTAATGGGAGATGCAATTGATGATGCCTTGGAAGGTGATGAAGAGGAGGAAGAGACAGAAGATCTTGTGAATCAGGTTCTTGATGAAATCGGAATCGATATCAATTCTGAGCTTTTGAATGCACCTACATCAACCTCTGTCACTGCACCAGCGGCAAATAACAGGGTTGCTCAAGCTGAATCAACAGGCCAAGAAGACAGTGGAATAGATGACGATCTTCAGGCTAGGTTGAATAACCTAAGAAAAATGTGA 675 0.4341 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQNQEKKLIVEIKKSAKQGQMGAVRVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQRIMQEFERQNEKMELVSEVMGDAIDDALEGDEEEEETEDLVNQVLDEIGIDINSELLNAPTSTSVTAPAANNRVAQAESTGQEDSGIDDDLQARLNNLRKM 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02179 224 Pfam Snf7 17 185 IPR005024 GO:0007034
Spst4g02179 224 Coils Coil 119 139 - -
Spst4g02179 224 MobiDBLite consensus disorder prediction 184 205 - -
Spst4g02179 224 Coils Coil 12 46 - -
Spst4g02179 224 Gene3D - 6 180 - -
Spst4g02179 224 MobiDBLite consensus disorder prediction 184 213 - -
Spst4g02179 224 PANTHER CHARGED MULTIVESICULAR BODY PROTEIN 4 222 IPR005024 GO:0007034
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02179 Spst-Chr4 62539450 62541577 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02179 K12191 - oeu:111403539 355.14