Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02174 ATGGAAACTGTGGTTGGAATTGAGGATAATGATGATGGGAAGTTTGAAGACAGTGGGGTGGGTAGAAGCAGTTCTGCTCTGTCTTCACCGAAGCAAATTTCTAACCCAATTGTATACAAGCTTGTTCGGGTTGAAGGTGATGGAAGGTTAGTGCCTGCAACAGATGATGAAGTAATGGAGGTGGGGGATTTTCTTGAGTATGAAAACAGTGAAATGCATGTTGTCGCAGACACTGGACAGAGTTTGGAATGCATATCAATTGAAAGATCATCTTCTGGGAAGCTTCGATTGGAGTGCTCGGAAGGGTCTGCAGAGGCAGATTTGGGGAAACTAAATGCAAAATTACAGTACATTGAGCAGATTTTGCAAAAGGTCAAAGAAGAAGAGAAACAACGGATATCATGTGGATCACCTGTTCATTCTCATGTAAATATAGACAGCCAGTGTTCAGCTGATAAATGTCCTGCCATGGATGGGAAGGTCCAATCTGAACCTCCCTACCAGGAAATTCCTTCCATAGCATCGAGTTTAAATTATACTCATAGCAATCAATCTGGGAGTATCGATCAGTGTTCCAGACCTTCAGAAGGAGTAATAGAAAGTGGGTCATCTGCTTCTGCTGTTCATTCCAATTTGAAGCCTGACCTTTCAATTTCAGATGGAGAAATATGCTTGGACAAGCTGTCAATCAGAGAACTTCATGAACTGTTTAAGGTAACTTTTGGTCGGGAAACTACTGTGAAAGACAAACAATGGCTGAAAAGGAGGATTGCCATGAGTTTAACCAACTCGTGTGATGTTTCAGCAACAACTTTCATTATTAAAGATAACAAAATAGTTAGAAAATTTGTAGAAGAAAGTGCTGGAAATATGAATGCTGCATCTTTAATCTCTTCAGAAACTGTGACTGAAGAAGACGATGTCAACTTTAAGGATTCATCTGCTGTAAATGCTTGTGGAATTGATGATAACCAAGTTGTTTCTGAAATAAGACTGAGAAATCACAATACAGAATATGGACTGGAAGATGAGAATCATCAGACAGATCAAAAAGCTGCAAAAAGAATTCGAAGGCCTACGAAGAGATATATTGAAGAGCTTTCTGAAAATGAGCACAATCCTAGGTTGCCAATTTGTAATAAAAACATGGGACTTGGACAAGTTTCTCCAACTTCATATGTCAGGCCTGGTAGAAATGCGTTTTCAGAGAGAAGATCATATGGCAGGAGGTTCGAATCTCTTGGAGGTTCTGATGTCCACATTCCTTGTGTGTCTCGGATTCGAAGAAGTCGTCCAAGGAAAGATATGGCATCTCTTATGAAATTCCATCCAACTGCCATGAGTGAGACTGCAAAATTGAGTAATAGGCTCATTGAGCATAGTTTTGATGCTGGTGGTGAGATTCCAGATAAAGTTTTGATGTCGAAAATGCCTGCTAAGTTGCATCAACCGTCTTCTTCTGAACCTGAGAAAGAGAAACAGTGTCCAGTAGTGGGCACAATTGAGCCACGGCAGGAATTAAGGCCAAAAAGGGCAGATCCATCTGGTCATACTTCAGATGACAACATAGTTACTGTTCCCACGGCAAAAGGAGGGATGAGGAGGAAGCATCATCGTGCATGGACTCTTGTTGAGGTCATAAAATTAGTTGAAGGTGTGTCACGGTGTGGGGCAGGGAGGTGGTCTGAAATCAAACGACTCTCCTTTGCGTCATACTCATATCGTACATCTGTTGATCTTAAGGACAAGTGGAGGAATTTGCTCAAAGCTAGCTTTGCACTGACACCTGCACCTGCTGACGAAGGGATTAATTCGCGGAAGCATGGTACGGCTCCAATTCCTGAGAAAATTTTACTACGTGTAAGAGAGCTTGCTGAGATGAATTCTCAGGTTCCTCCAAATTATAGCTCCAACAAGGTAGCAGCTGGTGCAGGGAGTGTGCATGGAGATAGATCAGGGGTTGATTACAGAAAAAAGCTTAGCTGTTTGCCCTTTTCGTGGTTTAAGCGGAAAATCAAAATGGGTATTATTGAGAAGATTAAAGAAATTGAAGCCGAAATGGCTCGGACCCAGAAGAACAAAGCCACAGAGTATCATCTTGGGCAGCTCAAGGCAAAGATAGCAAAACTAAGGACACAATTATTGGAGCCTCCGAAAGGTTCGAGTGGAGGTGGAGAAGGATTTGAAGTTACAAAATTTGGCCATGGACGTGTTGCGCTGATTGGATTTCCAAGTGTGGGGAAGTCTACTCTTTTGACAATGCTAACGGGCACACATTCTGAAGCTGCATCTTATGAGTTCACAACTCTGACCTGTATTCCTGGGATTATACACTACAATGATACTAAAATTCAGTTACTTGATCTTCCTGGAATTATTGAAGGTGCTTCTGAAGGCAAGGGACGAGGAAGACAGGTTATTGCTGTTGCTAAATCTTCAGACATAGTATTGATGGTTCTTGATGCTTCCAAAAGCGAGGGTCATAGACAAATATTAACGAGAGAGTTGGAAGCTGTGGGCTTGCGGTTAAACAAGAGACCACCTCAGATATATTTTAAAAAGAAAAAGACGGGGGGCATTTCATTCAACAGCACTTTGCCTTTGACTCATGTGGATGAGAAGCTTTGTTATCAAATCCTGCATGAGTACAAGATTCACAATGCAGAGGTCCTTTTTCGTGAGGATGCTACAGTGGATGATCTTATCGATGTCATTGAAGGAAACCGAAAATACATGAAGTGTGTATATGTCTACAACAAGATAGATGTTATTGGTATTGATGATGTGGACAGATTAGCCCGTCAACCCAATTCTGTTGTCATTAGCTGCAATTTGAAGCTGAACTTAGACAGACTACTTGGAAGGATGTGGGATGAAATGGGTCTGGTTAGAGTTTACACAAAACCTCAAGGCCAGCAGCCTGATTTTTCTGATCCTGTTGTTCTTTCTGTTGATAGAGGAGGCTGCACTGTAGAAGACTTCTGCAACCATATTCACAGAAGTTTGGTGAAGGATGTCAAATATGTTCTGGTGTGGGGTACAAGTGCGAGGCACTACCCACAACATTGCGGTCTTAGTCATAATCTTCGTGACGAGGATGTAGTACAAATTGTTAAGAAAAAGGAAAAGGAAGAGGGAGGAAGGGGAAGATTTAAATCACATTCCAATGCACCTGCTCGGATATCTGACAGAGAGAAGAAGGCACCACTGAAGACATAA 3219 0.4185 METVVGIEDNDDGKFEDSGVGRSSSALSSPKQISNPIVYKLVRVEGDGRLVPATDDEVMEVGDFLEYENSEMHVVADTGQSLECISIERSSSGKLRLECSEGSAEADLGKLNAKLQYIEQILQKVKEEEKQRISCGSPVHSHVNIDSQCSADKCPAMDGKVQSEPPYQEIPSIASSLNYTHSNQSGSIDQCSRPSEGVIESGSSASAVHSNLKPDLSISDGEICLDKLSIRELHELFKVTFGRETTVKDKQWLKRRIAMSLTNSCDVSATTFIIKDNKIVRKFVEESAGNMNAASLISSETVTEEDDVNFKDSSAVNACGIDDNQVVSEIRLRNHNTEYGLEDENHQTDQKAAKRIRRPTKRYIEELSENEHNPRLPICNKNMGLGQVSPTSYVRPGRNAFSERRSYGRRFESLGGSDVHIPCVSRIRRSRPRKDMASLMKFHPTAMSETAKLSNRLIEHSFDAGGEIPDKVLMSKMPAKLHQPSSSEPEKEKQCPVVGTIEPRQELRPKRADPSGHTSDDNIVTVPTAKGGMRRKHHRAWTLVEVIKLVEGVSRCGAGRWSEIKRLSFASYSYRTSVDLKDKWRNLLKASFALTPAPADEGINSRKHGTAPIPEKILLRVRELAEMNSQVPPNYSSNKVAAGAGSVHGDRSGVDYRKKLSCLPFSWFKRKIKMGIIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGGGEGFEVTKFGHGRVALIGFPSVGKSTLLTMLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVAKSSDIVLMVLDASKSEGHRQILTRELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDRLARQPNSVVISCNLKLNLDRLLGRMWDEMGLVRVYTKPQGQQPDFSDPVVLSVDRGGCTVEDFCNHIHRSLVKDVKYVLVWGTSARHYPQHCGLSHNLRDEDVVQIVKKKEKEEGGRGRFKSHSNAPARISDREKKAPLKT 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02174 1072 FunFam Developmentally-regulated GTP-binding protein 1 954 1041 - -
Spst4g02174 1072 Gene3D - 528 639 - -
Spst4g02174 1072 SMART sant 537 590 IPR001005 -
Spst4g02174 1072 ProSiteProfiles TGS domain profile. 961 1039 IPR004095 -
Spst4g02174 1072 Coils Coil 673 693 - -
Spst4g02174 1072 PRINTS GTP1/OBG GTP-binding protein family signature 786 801 IPR006073 GO:0005525
Spst4g02174 1072 PRINTS GTP1/OBG GTP-binding protein family signature 759 777 IPR006073 GO:0005525
Spst4g02174 1072 PRINTS GTP1/OBG GTP-binding protein family signature 738 758 IPR006073 GO:0005525
Spst4g02174 1072 PRINTS GTP1/OBG GTP-binding protein family signature 803 821 IPR006073 GO:0005525
Spst4g02174 1072 Pfam TGS domain 963 1039 IPR004095 -
Spst4g02174 1072 NCBIfam small GTP-binding protein domain 737 885 IPR005225 GO:0005525
Spst4g02174 1072 MobiDBLite consensus disorder prediction 479 526 - -
Spst4g02174 1072 CDD DRG 737 968 IPR045001 GO:0003924|GO:0005525
Spst4g02174 1072 MobiDBLite consensus disorder prediction 1041 1072 - -
Spst4g02174 1072 Pfam 50S ribosome-binding GTPase 737 852 IPR006073 GO:0005525
Spst4g02174 1072 Gene3D - 954 1046 IPR012675 -
Spst4g02174 1072 PANTHER DEVELOPMENTALLY-REGULATED GTP-BINDING PROTEIN 2 674 1066 IPR045001 GO:0003924|GO:0005525
Spst4g02174 1072 Coils Coil 108 128 - -
Spst4g02174 1072 ProSiteProfiles Myb-like domain profile. 541 588 IPR001005 -
Spst4g02174 1072 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 533 592 IPR017930 -
Spst4g02174 1072 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 737 975 IPR027417 -
Spst4g02174 1072 ProSitePatterns GTP1/OBG family signature. 788 801 IPR006074 GO:0005525
Spst4g02174 1072 Pfam Myb-like DNA-binding domain 540 588 IPR001005 -
Spst4g02174 1072 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 736 961 IPR031167 GO:0005525
Spst4g02174 1072 FunFam Developmentally-regulated GTP-binding protein 740 861 - -
Spst4g02174 1072 SUPERFAMILY TGS-like 957 1039 IPR012676 -
Spst4g02174 1072 CDD TGS_DRG1 960 1040 - -
Spst4g02174 1072 Gene3D - 805 910 - -
Spst4g02174 1072 Gene3D - 669 764 - -
Spst4g02174 1072 MobiDBLite consensus disorder prediction 1 30 - -
Spst4g02174 1072 Pfam C-terminal region of MMR_HSR1 domain 857 962 IPR031662 -
Spst4g02174 1072 SUPERFAMILY Homeodomain-like 535 593 IPR009057 -
Spst4g02174 1072 CDD SANT_TRF 539 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02174 Spst-Chr4 62498748 62511823 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02174 K06944 - gmx:100775511 1102.81